(Q51660250)

English

Kinetics and mechanism of the unfolding native-to-loop transition of Trp-cage in explicit solvent via optimized forward flux sampling simulations.

scientific article published in September 2010

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

9 April 2018

http://europepmc.org/abstract/MED/20849192

Kinetics and mechanism of the unfolding native-to-loop transition of Trp-cage in explicit solvent via optimized forward flux sampling simulations. (English)

1 reference

Europe PubMed Central

PubMed publication ID

9 April 2018

http://europepmc.org/abstract/MED/20849192

author name string

Camilo Velez-Vega

1

1 reference

Europe PubMed Central

PubMed publication ID

9 April 2018

http://europepmc.org/abstract/MED/20849192

Ernesto E Borrero

2

1 reference

Europe PubMed Central

PubMed publication ID

9 April 2018

http://europepmc.org/abstract/MED/20849192

Fernando A Escobedo

3

1 reference

Europe PubMed Central

PubMed publication ID

9 April 2018

http://europepmc.org/abstract/MED/20849192

language of work or name

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publication date

1 September 2010

1 reference

Europe PubMed Central

PubMed publication ID

9 April 2018

http://europepmc.org/abstract/MED/20849192

Journal of Chemical Physics

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Europe PubMed Central

PubMed publication ID

9 April 2018

http://europepmc.org/abstract/MED/20849192

133

1 reference

Europe PubMed Central

PubMed publication ID

9 April 2018

http://europepmc.org/abstract/MED/20849192

10

1 reference

Europe PubMed Central

PubMed publication ID

9 April 2018

http://europepmc.org/abstract/MED/20849192

105103

1 reference

Europe PubMed Central

PubMed publication ID

9 April 2018

http://europepmc.org/abstract/MED/20849192

Dynamics and cooperativity of Trp-cage folding.

1 reference

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21 January 2018

Sampling the multiple folding mechanisms of Trp-cage in explicit solvent

1 reference

https://api.crossref.org/works/10.1063%2F1.3474803

21 January 2018

Computing the stability diagram of the Trp-cage miniprotein

1 reference

https://api.crossref.org/works/10.1063%2F1.3474803

21 January 2018

Replica exchange simulation of reversible folding/unfolding of the Trp-cage miniprotein in explicit solvent: on the structure and possible role of internal water

1 reference

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21 January 2018

A bias-exchange approach to protein folding

1 reference

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21 January 2018

Application of the accelerated molecular dynamics simulations to the folding of a small protein

1 reference

https://api.crossref.org/works/10.1063%2F1.3474803

21 January 2018

Trp-cage: Folding free energy landscape in explicit water

1 reference

https://api.crossref.org/works/10.1063%2F1.3474803

21 January 2018

Comparison of stochastic optimization methods for all-atom folding of the Trp-Cage protein.

1 reference

https://api.crossref.org/works/10.1063%2F1.3474803

21 January 2018

Exploring peptide energy landscapes: a test of force fields and implicit solvent models.

1 reference

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Simulating rare events in equilibrium or nonequilibrium stochastic systems.

1 reference

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21 January 2018

Rate constant and reaction coordinate of Trp-cage folding in explicit water

1 reference

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21 January 2018

Smaller and faster: the 20-residue Trp-cage protein folds in 4 micros

1 reference

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21 January 2018

Transition path sampling and forward flux sampling. Applications to biological systems

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21 January 2018

Reaction coordinates and transition pathways of rare events via forward flux sampling.

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21 January 2018

Optimizing the sampling and staging for simulations of rare events via forward flux sampling schemes

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21 January 2018

Kinetics and reaction coordinate for the isomerization of alanine dipeptide by a forward flux sampling protocol.

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Accelerating the replica exchange method through an efficient all-pairs exchange.

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21 January 2018

Designing a 20-residue protein

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21 January 2018

A limiting speed for protein folding at low solvent viscosity

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21 January 2018

Automatic method for identifying reaction coordinates in complex systems.

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21 January 2018

Simulating the kinetics and thermodynamics of transitions via forward flux/umbrella sampling.

1 reference

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21 January 2018

Relevant distance between two different instances of the same potential energy in protein folding

1 reference

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21 January 2018

Forward flux sampling-type schemes for simulating rare events: Efficiency analysis

1 reference

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21 January 2018

Identifiers

10.1063/1.3474803

1 reference

Europe PubMed Central

PubMed publication ID

9 April 2018

http://europepmc.org/abstract/MED/20849192

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

9 April 2018

http://europepmc.org/abstract/MED/20849192

ResearchGate publication ID

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