(Q51898474)

17 April 2018

title

Topological estimation biases with covarion evolution. (English)

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17 April 2018

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4

Andrew J Roger

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17 April 2018

Huai-Chun Wang

series ordinal

1

object named as

Huai-Chun Wang

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17 April 2018

author name string

Edward Susko

series ordinal

2

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17 April 2018

Matthew Spencer

series ordinal

3

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17 April 2018

publication date

14 December 2007

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17 April 2018

Journal of Molecular Evolution

published in

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17 April 2018

volume

66

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17 April 2018

issue

1

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17 April 2018

page(s)

50-60

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17 April 2018

https://scigraph.springernature.com/pub.10.1007/s00239-007-9062-4

exact match

0 references

cites work

Topological bias and inconsistency of maximum likelihood using wrong models.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-007-9062-4

Maximum-likelihood phylogenetic analysis under a covarion-like model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-007-9062-4

Success of maximum likelihood phylogeny inference in the four-taxon case

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-007-9062-4

A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-007-9062-4

Heterotachy, an important process of protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-007-9062-4

Large differences in substitutional pattern and evolutionary rate of 12S ribosomal RNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-007-9062-4

Inferring phylogenies from DNA sequences of unequal base compositions

21 January 2018

1 reference

12 December 2020

Statistical methods for testing functional divergence after gene duplication

1 reference

12 December 2020

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

12 December 2020

Modeling compositional heterogeneity

1 reference

12 December 2020

Testing for covarion-like evolution in protein sequences

1 reference

12 December 2020

Artifactual phylogenies caused by correlated distribution of substitution rates among sites and lineages: the good, the bad, and the ugly.

1 reference

12 December 2020

Testing a covariotide model of DNA substitution

1 reference

12 December 2020

Likelihood, parsimony, and heterogeneous evolution

1 reference

12 December 2020

Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies.

1 reference

12 December 2020

Systematic bias in phylogenetic analysis: is the Strepsiptera problem solved?

1 reference

12 December 2020

Evolution of chlorophyll and bacteriochlorophyll: the problem of invariant sites in sequence analysis

1 reference

12 December 2020

The rapid generation of mutation data matrices from protein sequences

1 reference

12 December 2020

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

1 reference

12 December 2020

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

1 reference

12 December 2020

Rate of change of concomitantly variable codons

1 reference

12 December 2020

An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution

1 reference

12 December 2020

Modeling the covarion hypothesis of nucleotide substitution.

1 reference

12 December 2020

Testing the covarion hypothesis of molecular evolution

1 reference

12 December 2020

Function-structure analysis of proteins using covarion-based evolutionary approaches: Elongation factors

1 reference

12 December 2020

How molecules evolve in eubacteria

1 reference

12 December 2020

Fitting Discrete Probability Distributions to Evolutionary Events

1 reference

12 December 2020

A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates

1 reference

12 December 2020

Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters

1 reference

12 December 2020

On inconsistency of the neighbor-joining, least squares, and minimum evolution estimation when substitution processes are incorrectly modeled.

1 reference

12 December 2020

Covarion structure in plastid genome evolution: a new statistical test

1 reference

12 December 2020

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

1 reference

12 December 2020

A covarion-based method for detecting molecular adaptation: application to the evolution of primate mitochondrial genomes

1 reference

12 December 2020

Should phylogenetic models be trying to "fit an elephant"?

1 reference

12 December 2020

Maximum Likelihood Outperforms Maximum Parsimony Even When Evolutionary Rates Are Heterotachous

1 reference

12 December 2020

A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data

1 reference

12 December 2020

Heterotachy and long-branch attraction in phylogenetics

1 reference

12 December 2020

PAML: a program package for phylogenetic analysis by maximum likelihood

1 reference

12 December 2020

Recovering evolutionary trees under a more realistic model of sequence evolution

1 reference

12 December 2020

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

1 reference

12 December 2020

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

1 reference

12 December 2020

Mathematical elegance with biochemical realism: the covarion model of molecular evolution

1 reference

12 December 2020

A call for likelihood phylogenetics even when the process of sequence evolution is heterogeneous

1 reference

12 December 2020

Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods

1 reference

12 December 2020

10.1007/S00239-007-9062-4

Identifiers

DOI

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17 April 2018

1 reference

17 April 2018