(Q52315063)

29 April 2018

http://europepmc.org/abstract/MED/29674432

title

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics. (English)

1 reference

29 April 2018

http://europepmc.org/abstract/MED/29674432

main subject

transcriptome

0 references

single cell transcriptomics

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Mireya Plass

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Jordi Solana

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

F. Alexander Wolf

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Salah Ayoub

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Petar Glažar

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Benedikt Obermayer

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Christine Kocks

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Nikolaus Rajewsky

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

author name string

Aristotelis Misios

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

language of work or name

English

0 references

publication date

19 April 2018

1 reference

29 April 2018

http://europepmc.org/abstract/MED/29674432

published in

Science

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

volume

360

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

issue

6391

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

10 June 2020

Drop-seq

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

Diffusion pseudotime robustly reconstructs lineage branching.

7 February 2021

cites work

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

In silico lineage tracing through single cell transcriptomics identifies a neural stem cell population in planarians

1 April 2022

1 reference

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Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars.

1 April 2022

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Conserved functional antagonism of CELF and MBNL proteins controls stem cell-specific alternative splicing in planarians

1 April 2022

1 reference

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Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis

1 April 2022

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Hedgehog signaling regulates gene expression in planarian glia.

1 April 2022

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Quantitative analysis of cell types during growth, degrowth and regeneration in the planarians Dugesia mediterranea and Dugesia tigrina

1 April 2022

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Fast unfolding of communities in large networks

1 April 2022

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Mpath maps multi-branching single-cell trajectories revealing progenitor cell progression during development

1 April 2022

1 reference

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Fundamentals of planarian regeneration

1 April 2022

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Forkhead containing transcription factor Albino controls tetrapyrrole-based body pigmentation in planarian

1 April 2022

1 reference

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Whole-organism clone tracing using single-cell sequencing.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Morphogenesis defects are associated with abnormal nervous system regeneration following roboA RNAi in planarians

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Genome-wide analyses reveal a role for peptide hormones in planarian germline development

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Robust lineage reconstruction from high-dimensional single-cell data.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Single-cell states versus single-cell atlases - two classes of heterogeneity that differ in meaning and method

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Defining the molecular profile of planarian pluripotent stem cells using a combinatorial RNAseq, RNA interference and irradiation approach.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Human haematopoietic stem cell lineage commitment is a continuous process

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Unifying principles of regeneration I: Epimorphosis versus morphallaxis.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

A Generic and Cell-Type-Specific Wound Response Precedes Regeneration in Planarians

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Isolation of planarian X-ray-sensitive stem cells by fluorescence-activated cell sorting

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Orthogonal muscle fibres have different instructive roles in planarian regeneration.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

An in situ hybridization protocol for planarian embryos: monitoring myosin heavy chain gene expression.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Clonogenic neoblasts are pluripotent adult stem cells that underlie planarian regeneration

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Comprehensive single-cell transcriptional profiling of a multicellular organism.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Molecular analysis of stem cells and their descendants during cell turnover and regeneration in the planarian Schmidtea mediterranea

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

PlanMine--a mineable resource of planarian biology and biodiversity

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Gene expression of pluripotency determinants is conserved between mammalian and planarian stem cells.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Single-cell messenger RNA sequencing reveals rare intestinal cell types

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Transcriptome analysis of the planarian eye identifies ovo as a specific regulator of eye regeneration

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Single-cell topological RNA-seq analysis reveals insights into cellular differentiation and development

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Graph drawing by force-directed placement

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Reversed graph embedding resolves complex single-cell trajectories.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Single-cell transcriptome conservation in cryopreserved cells and tissues

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Planarian regeneration involves distinct stem cell responses to wounds and tissue absence

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

A comparative transcriptomic analysis reveals conserved features of stem cell pluripotency in planarians and mammals

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

STAR: ultrafast universal RNA-seq aligner

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

The CCR4-NOT complex mediates deadenylation and degradation of stem cell mRNAs and promotes planarian stem cell differentiation

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

The maintenance and regeneration of the planarian excretory system are regulated by EGFR signaling

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Synthetic recording and in situ readout of lineage information in single cells.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Cell fixation and preservation for droplet-based single-cell transcriptomics

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Allometric scaling and proportion regulation in the freshwater planarian Schmidtea mediterranea

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Wishbone identifies bifurcating developmental trajectories from single-cell data

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Whole-organism lineage tracing by combinatorial and cumulative genome editing

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

COE loss-of-function analysis reveals a genetic program underlying maintenance and regeneration of the nervous system in planarians

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Planarian Epidermal Stem Cells Respond to Positional Cues to Promote Cell-Type Diversity.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

SmedGD: the Schmidtea mediterranea genome database

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Single-cell analysis reveals functionally distinct classes within the planarian stem cell compartment

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Distinct routes of lineage development reshape the human blood hierarchy across ontogeny

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

The Drosophila embryo at single-cell transcriptome resolution.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Light-induced depigmentation in planarians models the pathophysiology of acute porphyrias

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Gtdap-1 promotes autophagy and is required for planarian remodeling during regeneration and starvation

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

A functional genomics screen in planarians reveals regulators of whole-brain regeneration.

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

Single-cell mRNA quantification and differential analysis with Census

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

SCANPY: large-scale single-cell gene expression data analysis.

1 April 2022

2 references

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAQ1723

1 April 2022

https://opencitations.net/index/coci/api/v1/citations/10.1186/S13059-017-1382-0

1 April 2022

Identifiers

DOI

10.1126/SCIENCE.AAQ1723

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29674432%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

1 reference