(Q52326237)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

title

Whole-genome resequencing reveals signatures of selection and timing of duck domestication (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

1 reference

whole genome sequencing

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Pedro Almeida

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

author name string

Yaxiong Jia

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Marcel van Tuinen

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Qiong Wang

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Zhihua Jiang

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Yu Chen

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Kai Zhan

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Shuisheng Hou

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Zhengkui Zhou

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Huifang Li

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Fangxi Yang

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Yong He

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Zhonghua Ning

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Ning Yang

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Lujiang Qu

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

Judith E Mank

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

publication date

1 April 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

22 March 2020

copyright license

start time

9 April 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Domestication history and geographical adaptation inferred from a SNP map of African rice

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Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation.

15 July 2018

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Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley

15 July 2018

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Whole-Genome Sequencing of Native Sheep Provides Insights into Rapid Adaptations to Extreme Environments

15 July 2018

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Positive selection rather than relaxation of functional constraint drives the evolution of vision during chicken domestication

15 July 2018

1 reference

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15 July 2018

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15 July 2018

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Parallel Evolution of Polydactyly Traits in Chinese and European Chickens

15 July 2018

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Genomic Analyses Reveal Demographic History and Temperate Adaptation of the Newly Discovered Honey Bee Subspecies Apis mellifera sinisxinyuan n. ssp

15 July 2018

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Yak whole-genome resequencing reveals domestication signatures and prehistoric population expansions

15 July 2018

1 reference

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Differences in hindlimb morphology of ducks and chickens: effects of domestication and selection

15 July 2018

1 reference

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Computationally Efficient Composite Likelihood Statistics for Demographic Inference

15 July 2018

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Genetic responses to seasonal variation in altitudinal stress: whole-genome resequencing of great tit in eastern Himalayas

15 July 2018

1 reference

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Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences

15 July 2018

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Second-generation PLINK: rising to the challenge of larger and richer datasets

15 July 2018

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Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

15 July 2018

1 reference

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Genome-wide characterization of insertion and deletion variation in chicken using next generation sequencing.

15 July 2018

1 reference

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The sheep genome illuminates biology of the rumen and lipid metabolism

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

The duck genome and transcriptome provide insight into an avian influenza virus reservoir species

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Genomic diversity and evolution of the head crest in the rock pigeon

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Loss of function of glucocerebrosidase GBA2 is responsible for motor neuron defects in hereditary spastic paraplegia

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Alteration of fatty-acid-metabolizing enzymes affects mitochondrial form and function in hereditary spastic paraplegia

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Recurrent de novo mutations in PACS1 cause defective cranial-neural-crest migration and define a recognizable intellectual-disability syndrome

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

STAR: ultrafast universal RNA-seq aligner

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Identification of genes related to white and black plumage formation by RNA-Seq from white and black feather bulbs in ducks

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

NGS QC Toolkit: a toolkit for quality control of next generation sequencing data

15 July 2018

1 reference

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Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

15 July 2018

1 reference

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Species-specific responses of Late Quaternary megafauna to climate and humans

15 July 2018

1 reference

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Inference of human population history from individual whole-genome sequences

15 July 2018

1 reference

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15 July 2018

1 reference

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

15 July 2018

1 reference

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GCTA: a tool for genome-wide complex trait analysis

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Molecular evolution of genes in avian genomes

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Deletion of PIK3C3/Vps34 in sensory neurons causes rapid neurodegeneration by disrupting the endosomal but not the autophagic pathway

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Whole-genome resequencing reveals loci under selection during chicken domestication

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

The "silver" Japanese quail and the MITF gene: causal mutation, associated traits and homology with the "blue" chicken plumage

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Mammalian patatin domain containing proteins: a family with diverse lipolytic activities involved in multiple biological functions

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Mapping short DNA sequencing reads and calling variants using mapping quality scores

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Disruption of the RIIbeta subunit of PKA reverses the obesity syndrome of Agouti lethal yellow mice

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Efficient mapping of mendelian traits in dogs through genome-wide association

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Moderated statistical tests for assessing differences in tag abundance

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

PLINK: a tool set for whole-genome association and population-based linkage analyses

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

On the role of NR3A in human NMDA receptors

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

MITF: master regulator of melanocyte development and melanoma oncogene

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Characterization of the human patatin-like phospholipase family

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Estimation of individual admixture: analytical and study design considerations

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Melanocytes and the microphthalmia transcription factor network

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Identification of PIK3C3 promoter variant associated with bipolar disorder and schizophrenia.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Genetic consequences of climatic oscillations in the Quaternary

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

MUSCLE: multiple sequence alignment with high accuracy and high throughput

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Domesticated birds as a model for the genetics of speciation by sexual selection

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

The genetic legacy of the Quaternary ice ages

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

A human phosphatidylinositol 3-kinase complex related to the yeast Vps34p-Vps15p protein sorting system

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Domestication and plasticity of brain organization in mallards (Anas platyrhynchos).

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Evolutionary relationship of DNA sequences in finite populations

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Phosducin is a protein kinase A-regulated G-protein regulator

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Identification of polymorphisms in MITF and DCT genes and their associations with plumage colors in Asian duck breeds.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Morphological characterization of Class III phosphoinositide 3-kinase during mouse brain development.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Protein kinase cAMP-dependent regulatory type II beta (PRKAR2B) gene variants in antipsychotic-induced weight gain.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Investigation of variants in the promoter region of PIK3C3 in schizophrenia.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Evolutionary sequence comparison of the Mitf gene reveals novel conserved domains.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Brain alterations in crested versus non-crested breeds of domestic ducks (Anas platyrhynchos f.d.).

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

Arrestin and phosducin are expressed in a small number of brain cells.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6007426

10.1093/GIGASCIENCE/GIY027

13 August 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

release_jktpu4dqz5gtjijny2iwpinofu

22 March 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/jktpu4dqz5gtjijny2iwpinofu

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29635409%20AND%20SRC:MED&resulttype=core&format=json

22 March 2020

PubMed publication ID

29635409

1 reference