(Q52720184)

6 May 2018

title

Transcription factor binding sites and other features in human and Drosophila proximal promoters. (English)

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6 May 2018

author name string

Charles Vinson

series ordinal

1

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6 May 2018

Raghunath Chatterjee

series ordinal

2

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6 May 2018

Peter Fitzgerald

series ordinal

3

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6 May 2018

publication date

1 January 2011

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6 May 2018

Sub-cellular biochemistry

published in

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6 May 2018

volume

52

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6 May 2018

page(s)

205-222

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6 May 2018

A discrimination study of human core-promoters.

cites work

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Transcriptional regulation by the phosphorylation-dependent factor CREB

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Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

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ATF-2 and C/EBPalpha can form a heterodimeric DNA binding complex in vitro. Functional implications for transcriptional regulation

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G+C content dominates intrinsic nucleosome occupancy

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Specificity within the ets family of transcription factors

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The architecture of mammalian ribosomal protein promoters

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The ETS-domain transcription factor family

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CpG-rich islands and the function of DNA methylation

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Specificities of protein-protein and protein-DNA interaction of GABP alpha and two newly defined ets-related proteins

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Classification of human B-ZIP proteins based on dimerization properties

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Crystal structure of the yeast TFIIA/TBP/DNA complex

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Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA

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Comparative genomics of Drosophila and human core promoters

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Genome-scale identification of nucleosome positions in S. cerevisiae

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Base preferences for DNA binding by the bHLH-Zip protein USF: effects of MgCl2 on specificity and comparison with binding of Myc family members.

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Transcriptional regulation by cyclic AMP.

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The epigenomics of cancer

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CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation

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YY1's longer DNA-binding motifs

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Genome-scale profiling of histone H3.3 replacement patterns.

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Dimerization specificity of the leucine zipper-containing bZIP motif on DNA binding: prediction and rational design

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Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

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Nuclear control of respiratory gene expression in mammalian cells

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Computational analysis of core promoters in the Drosophila genome

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Clustering of DNA sequences in human promoters

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Dramatic changes in transcription factor binding over evolutionary time

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A high-resolution map of active promoters in the human genome

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Coexamination of site-specific transcription factor binding and promoter activity in living cells

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Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

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Exploring the characteristics of sequence elements in proximal promoters of human genes

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CpG islands in vertebrate genomes

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Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

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Discovering sequences with potential regulatory characteristics

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High nucleosome occupancy is encoded at human regulatory sequences

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Statistical analysis of over-represented words in human promoter sequences

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DNA methylation profiling of human chromosomes 6, 20 and 22

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The structure of a CREB bZIP.somatostatin CRE complex reveals the basis for selective dimerization and divalent cation-enhanced DNA binding

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All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues

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DNA methylation patterns and epigenetic memory

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10.1007/978-90-481-9069-0_10

Identifiers

DOI

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6 May 2018

0 references

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6 May 2018