(Q53595311)

16 May 2018

title

DNA and RNA editing of retrotransposons accelerate mammalian genome evolution. (English)

1 reference

16 May 2018

author

Erez Y. Levanon

series ordinal

2

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16 May 2018

author name string

Binyamin A Knisbacher

series ordinal

1

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16 May 2018

language of work or name

English

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publication date

26 February 2015

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16 May 2018

Annals of the New York Academy of Sciences

published in

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16 May 2018

volume

1341

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16 May 2018

page(s)

115-125

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16 May 2018

Intrinsic immunity against retrotransposons by APOBEC cytidine deaminases

cites work

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Differential inhibition of LINE1 and LINE2 retrotransposition by vertebrate AID/APOBEC proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

DNA deamination mediates innate immunity to retroviral infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

APOBEC3G cytidine deaminase inhibits retrotransposition of endogenous retroviruses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Inhibition of a yeast LTR retrotransposon by human APOBEC3 cytidine deaminases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

APOBEC3G hypermutates genomic DNA and inhibits Ty1 retrotransposition in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

All APOBEC3 family proteins differentially inhibit LINE-1 retrotransposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Differential inhibition of long interspersed element 1 by APOBEC3 does not correlate with high-molecular-mass-complex formation or P-body association

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Guidelines for naming nonprimate APOBEC3 genes and proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Rapid evolution of primate antiviral enzyme APOBEC3G.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Transduction of 3'-flanking sequences is common in L1 retrotransposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Frequent human genomic DNA transduction driven by LINE-1 retrotransposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Large-scale DNA editing of retrotransposons accelerates mammalian genome evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Dual inhibitory effects of APOBEC family proteins on retrotransposition of mammalian endogenous retroviruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

APOBEC3A and APOBEC3B are potent inhibitors of LTR-retrotransposon function in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Restriction of porcine endogenous retrovirus by porcine APOBEC3 cytidine deaminases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Quantitative profiling of the full APOBEC3 mRNA repertoire in lymphocytes and tissues: implications for HIV-1 restriction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

APOBEC3A deaminates transiently exposed single-strand DNA during LINE-1 retrotransposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

APOBEC3G-induced hypermutation of human immunodeficiency virus type-1 is typically a discrete "all or nothing" phenomenon

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

The DNA methylation landscape of human early embryos

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

DNA sequence insertion and evolutionary variation in gene regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Transposable elements and the evolution of regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Thousands of human mobile element fragments undergo strong purifying selection near developmental genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Burgeoning evidence indicates that microRNAs were initially formed from transposable element sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Evidence for co-evolution between human microRNAs and Alu-repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Powerful mutators lurking in the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

APOBEC-mediated editing of viral RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Evolution of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Somatic hypermutation is limited by CRM1-dependent nuclear export of activation-induced deaminase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Activation-induced cytidine deaminase shuttles between nucleus and cytoplasm like apolipoprotein B mRNA editing catalytic polypeptide 1

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Functions and regulation of the APOBEC family of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Mutational processes molding the genomes of 21 breast cancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

APOBEC3B is an enzymatic source of mutation in breast cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Somatic hypermutation of human mitochondrial and nuclear DNA by APOBEC3 cytidine deaminases, a pathway for DNA catabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

APOBEC3B can impair genomic stability by inducing base substitutions in genomic DNA in human cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

APOBEC3 proteins mediate the clearance of foreign DNA from human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Subcellular localization of the APOBEC3 proteins during mitosis and implications for genomic DNA deamination.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Analysis of reptilian APOBEC1 suggests that RNA editing may not be its ancestral function

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

RNA editing by adenosine deaminases that act on RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Functions and regulation of RNA editing by ADAR deaminases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

21 January 2018

The ADAR protein family

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Sequence based identification of RNA editing sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

A genome-wide map of hyper-edited RNA reveals numerous new sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

REDItools: high-throughput RNA editing detection made easy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Identifying RNA editing sites using RNA sequencing data alone

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

High levels of RNA-editing site conservation amongst 15 laboratory mouse strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Accurate identification of human Alu and non-Alu RNA editing sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Mammalian conserved ADAR targets comprise only a small fragment of the human editosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

A survey of RNA editing in human brain

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Systematic identification of abundant A-to-I editing sites in the human transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Widespread RNA editing of embedded alu elements in the human transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Regulating gene expression through RNA nuclear retention

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Inosine-containing dsRNA binds a stress-granule-like complex and downregulates gene expression in trans

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Double-stranded RNAs containing multiple IU pairs are sufficient to suppress interferon induction and apoptosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

RNA-editing-mediated exon evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Regulation of alternative splicing by RNA editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Hypothesis: RNA editing of microRNA target sites in humans?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Evidence for large diversity in the human transcriptome created by Alu RNA editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

RNA editing: a driving force for adaptive evolution?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Genome-wide analysis of Alu editability

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Human coding RNA editing is generally nonadaptive

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

RNA editing underlies temperature adaptation in K+ channels from polar octopuses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

RNA editing changes the lesion specificity for the DNA repair enzyme NEIL1

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Alu elements shape the primate transcriptome by cis-regulation of RNA editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Recoding RNA editing of AZIN1 predisposes to hepatocellular carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Adenosine-to-inosine RNA editing shapes transcriptome diversity in primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

RNA editing, DNA recoding and the evolution of human cognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

A-to-I RNA editing and human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

Alu elements within human mRNAs are probable microRNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FNYAS.12713

21 January 2018

Identifiers

DOI

10.1111/NYAS.12713

1 reference

16 May 2018

1 reference

16 May 2018