(Q54765737)

3 June 2018

title

Elastic network normal mode dynamics reveal the GPCR activation mechanism. (English)

1 reference

3 June 2018

author name string

Dikla Kolan

series ordinal

1

1 reference

3 June 2018

Gennadiy Fonar

series ordinal

2

1 reference

3 June 2018

Abraham O Samson

series ordinal

3

1 reference

3 June 2018

language of work or name

English

0 references

publication date

17 October 2013

1 reference

3 June 2018

published in

Proteins

1 reference

3 June 2018

volume

82

1 reference

3 June 2018

issue

4

1 reference

3 June 2018

page(s)

579-586

1 reference

3 June 2018

Molecular mechanism of 7TM receptor activation--a global toggle switch model

cites work

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Structure and dynamics of the M3 muscarinic acetylcholine receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Muscarinic receptor subtypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Chemokines: multiple levels of leukocyte migration control.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

The chemokine receptors CXCR4 and CXCR3 in cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

HIV-1 Entry Cofactor: Functional cDNA Cloning of a Seven-Transmembrane, G Protein-Coupled Receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Pharmacogenetics of the human beta-adrenergic receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

The role and regulation of adenosine in the central nervous system

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Crystal structure of rhodopsin: A G protein-coupled receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

G protein-coupled receptor rhodopsin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Dynamics of a small globular protein in terms of low-frequency vibrational modes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Simplified normal mode analysis of conformational transitions in DNA-dependent polymerases: the elastic network model

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Analysis of domain motions by approximate normal mode calculations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Anisotropy of fluctuation dynamics of proteins with an elastic network model

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Conformational change of proteins arising from normal mode calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Anisotropic network model: systematic evaluation and a new web interface.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Normal modes of prion proteins: from native to infectious particle

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Inhibition mechanism of the acetylcholine receptor by alpha-neurotoxins as revealed by normal-mode dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Implications of the quaternary twist allosteric model for the physiology and pathology of nicotinic acetylcholine receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Global dynamics of proteins: bridging between structure and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Modeling activated states of GPCRs: the rhodopsin template

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Analysis of the mode-specific excited-state energy distribution and wavelength-dependent photoreaction quantum yield in rhodopsin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Predisposition of the dark state of rhodopsin to functional changes in structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Mechanism of signal propagation upon retinal isomerization: insights from molecular dynamics simulations of rhodopsin restrained by normal modes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Influence of oligomerization on the dynamics of G-protein coupled receptors as assessed by normal mode analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

iAPBS: a programming interface to Adaptive Poisson-Boltzmann Solver (APBS).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

VMD: visual molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Optimized torsion-angle normal modes reproduce conformational changes more accurately than cartesian modes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Crystal structure of the β2 adrenergic receptor-Gs protein complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Conformational changes in the G protein Gs induced by the β2 adrenergic receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

On the functional significance of soft modes predicted by coarse-grained models for membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

A normal mode analysis of structural plasticity in the biomolecular motor F(1)-ATPase

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Can conformational change be described by only a few normal modes?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Quaternary ligand binding to aromatic residues in the active-site gorge of acetylcholinesterase

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Crystal structure of an ACh-binding protein reveals the ligand-binding domain of nicotinic receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

The mechanism for acetylcholine receptor inhibition by alpha-neurotoxins and species-specific resistance to alpha-bungarotoxin revealed by NMR

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Metal ion site engineering indicates a global toggle switch model for seven-transmembrane receptor activation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Ligand-independent dimerization of CXCR4, a principal HIV-1 coreceptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

Dimerization of chemokine receptors in living cells: key to receptor function and novel targets for therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24426

21 January 2018

Identifiers

DOI

10.1002/PROT.24426

1 reference

3 June 2018

1 reference

3 June 2018