(Q55468172)

http://europepmc.org/abstract/PMC/5910433

12 July 2018

title

Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi. (English)

1 reference

http://europepmc.org/abstract/PMC/5910433

12 July 2018

1 reference

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Laszlo Tamas

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Igor V. Grigoriev

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Dániel G Knapp

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Bernard Henrissat

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

László G Nagy

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Gábor M. Kovács

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

9

Anna Lipzen

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

14

Joseph W Spatafora

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

7

Alan Kuo

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

4

Matthieu Hainaut

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

10

Matt Nolan

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

11

Robin A Ohm

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

author name string

Julianna B Németh

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Jenifer Johnson

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Joanne Hui Ping Lim

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

language of work or name

English

0 references

publication date

20 April 2018

1 reference

http://europepmc.org/abstract/PMC/5910433

12 July 2018

published in

Scientific Reports

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

page(s)

6321

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

11 June 2020

copyright license

start time

20 April 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass

15 July 2018

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Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent.

15 July 2018

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15 July 2018

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Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin

15 July 2018

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Dark septate endophytic pleosporalean genera from semiarid areas.

15 July 2018

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The genome of Xylona heveae provides a window into fungal endophytism

15 July 2018

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The local environment determines the assembly of root endophytic fungi at a continental scale.

15 July 2018

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15 July 2018

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The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

15 July 2018

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Fungal effectors and plant susceptibility

15 July 2018

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The diversity of fungal genome

15 July 2018

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Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

15 July 2018

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The importance of the microbiome of the plant holobiont

15 July 2018

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Genomic and transcriptomic analysis of the endophytic fungus Pestalotiopsis fici reveals its lifestyle and high potential for synthesis of natural products

15 July 2018

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Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens

15 July 2018

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New subfamilies of major intrinsic proteins in fungi suggest novel transport properties in fungal channels: implications for the host-fungal interactions

15 July 2018

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The rice endophyte Harpophora oryzae genome reveals evolution from a pathogen to a mutualistic endophyte.

15 July 2018

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Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts.

15 July 2018

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Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

15 July 2018

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Is the prominent ericoid mycorrhizal fungus Rhizoscyphus ericae absent in the Southern Hemisphere's Ericaceae? A case study on the diversity of root mycobionts in Gaultheria spp. from northwest Patagonia, Argentina.

15 July 2018

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Draft Genome Sequence of Colletotrichum acutatum Sensu Lato (Colletotrichum fioriniae).

15 July 2018

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15 July 2018

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15 July 2018

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The carbohydrate-active enzymes database (CAZy) in 2013

15 July 2018

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15 July 2018

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Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

15 July 2018

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Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci

15 July 2018

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The impact of transposable elements in environmental adaptation.

15 July 2018

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Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi

15 July 2018

1 reference

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TreeFix: statistically informed gene tree error correction using species trees

15 July 2018

1 reference

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Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Genome evolution in filamentous plant pathogens: why bigger can be better

15 July 2018

1 reference

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The dark side is not fastidious--dark septate endophytic fungi of native and invasive plants of semiarid sandy areas

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Synthesis and assembly of fungal melanin

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Saccharomyces Genome Database: the genomics resource of budding yeast

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

SignalP 4.0: discriminating signal peptides from transmembrane regions

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Conserved meiotic machinery in Glomus spp., a putatively ancient asexual fungal lineage

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Metarhizium anisopliae lipolytic activity plays a pivotal role in Rhipicephalus (Boophilus) microplus infection

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Diversity and distribution of soil fungal communities in a semiarid grassland.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

An Antarctic hot spot for fungi at Shackleton's historic hut on Cape Royds

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Friend or foe? Evolutionary history of glycoside hydrolase family 32 genes encoding for sucrolytic activity in fungi and its implications for plant-fungal symbioses

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Hidden fungi, emergent properties: endophytes and microbiomes

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Fungal endophytes: diversity and functional roles.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Novel root fungal consortium associated with a dominant desert grass

15 July 2018

1 reference

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The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Comparative analysis of programmed cell death pathways in filamentous fungi

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

15 July 2018

The endophytic continuum

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

15 July 2018

https://api.crossref.org/works/10.1038%2FS41598-018-24686-4

7 January 2021

Atypical morphology of dark septate fungal root endophytes of Bouteloua in arid southwestern USA rangelands

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Biosynthesis of fungal melanins and their importance for human pathogenic fungi

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

An efficient algorithm for large-scale detection of protein families

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Transcriptional regulation of meiosis in yeast

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

A developmentally regulated gene cluster involved in conidial pigment biosynthesis in Aspergillus fumigatus.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

The developmentally regulated alb1 gene of Aspergillus fumigatus: its role in modulation of conidial morphology and virulence

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Interspecific metabolic diversity of root-colonizing endophytic fungi revealed by enzyme activity tests.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

The effects of fungal root endophytes on plant growth: a meta-analysis

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Septate endophyte colonization and host responses of grasses and forbs native to a tallgrass prairie

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Seasonal and temporal dynamics of arbuscular mycorrhizal and dark septate endophytic fungi in a tallgrass prairie ecosystem are minimally affected by nitrogen enrichment.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

A secreted lipase of Fusarium graminearum is a virulence factor required for infection of cereals

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Local modulation of host pH by Colletotrichum species as a mechanism to increase virulence

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

Extensive Fungal Diversity in Plant Roots

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5910433

FUNGAL ENDOPHYTES: A Continuum of Interactions with Host Plants

30 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-24686-4

7 January 2021

Fungal associations of roots of dominant and sub-dominant plants in high-alpine vegetation systems with special reference to mycorrhiza

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-24686-4

7 January 2021

Associations between microfungal endophytes and roots: do structural features indicate function?

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-24686-4

7 January 2021

A meta-analysis of plant responses to dark septate root endophytes

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-24686-4

7 January 2021

A general suite of fungal endophytes dominate the roots of two dominant grasses in a semiarid grassland

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-24686-4

7 January 2021

raxmlGUI: a graphical front-end for RAxML

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-24686-4

7 January 2021

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-24686-4

7 January 2021

Comparative genomic and transcriptomic analyses reveal the hemibiotrophic stage shift of Colletotrichum fungi

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-24686-4

7 January 2021

Ecology of ericoid mycorrhizal fungi

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-24686-4

7 January 2021

A secreted effector protein of Laccaria bicolor is required for symbiosis development

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-24686-4

7 January 2021

The influence of ectotrophic mycorrhizal fungi on the resistance of pine roots to pathogenic infections. II. Production, identification, and biological activity of antibiotics produced by Leucopaxillus cerealis var. piceina

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29679020

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/S41598-018-24686-4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

release_3n5y2bsyt5d63haotlxzwbyuey

11 June 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/3n5y2bsyt5d63haotlxzwbyuey

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29679020%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

PubMed publication ID

29679020

1 reference