(Q55518659)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

title

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1 reference

1 reference

0 references

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Daniel Blankenberg

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Bérénice Batut

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

John Chilton

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Vahid Jalili

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Helena Rasche

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Nicola Soranzo

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

James Taylor

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

6

Martin Cech

1 reference

27 March 2020

19

Anton Nekrutenko

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

17

Jeremy Goecks

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

9

Nate Coraor

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1

Enis Afgan

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

4

Marius van den Beek

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

13

Saskia Hiltemann

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

2

Dannon Baker

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Jennifer Hillman-Jackson

12

object named as

Jennifer Hillman-Jackson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

author name string

Dave Bouvier

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Dave Clements

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Aysam Guerler

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

language of work or name

English

0 references

publication date

1 July 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

volume

46

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

issue

W1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

page(s)

W537-W544

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

27 March 2020

copyright license

start time

22 May 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Jupyter notebook file

1 reference

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Singularity: Scientific containers for mobility of compute

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

BioContainers: An open-source and community-driven framework for software standardization

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Salmon provides fast and bias-aware quantification of transcript expression

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

MultiQC: summarize analysis results for multiple tools and samples in a single report.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

deepTools2: a next generation web server for deep-sequencing data analysis

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Near-optimal probabilistic RNA-seq quantification

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

NCBI BLAST+ integrated into Galaxy.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

NGL Viewer: a web application for molecular visualization

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Online resources for genomic analysis using high-throughput sequencing

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Poretools: a toolkit for analyzing nanopore sequence data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Dissemination of scientific software with Galaxy ToolShed

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

deepTools: a flexible platform for exploring deep-sequencing data.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Wrangling Galaxy's reference data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

GEMINI: integrative exploration of genetic variation and genome annotations

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Web-based visual analysis for high-throughput genomics

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

BioJS: an open source JavaScript framework for biological data visualization

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

STAR: ultrafast universal RNA-seq aligner

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

BioStar: An Online Question & Answer Resource for the Bioinformatics Community

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

QIIME allows analysis of high-throughput community sequencing data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

BLAST+: architecture and applications

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Galaxy: a platform for interactive large-scale genome analysis

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Cytoscape: a software environment for integrated models of biomolecular interaction networks

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

Biology Needs Evolutionary Software Tools: Let's Build Them Right.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

High-resolution TADs reveal DNA sequences underlying genome organization in flies.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030816

ChemicalToolBoX and its application on the study of the drug like and purchasable space.

12 August 2018

1 reference

https://opencitations.net/index/coci/api/v1/citations/10.1186/1758-2946-6-S1-P51

2 January 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1093/NAR/GKY379

An Expanded Genetic Code Enables Trimethylamine Metabolism in Human Gut Bacteria

1 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1093/NAR/GKY379

SLURM: Simple Linux Utility for Resource Management

1 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1093/NAR/GKY379

Distributed computing in practice: the Condor experience

1 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1093/NAR/GKY379

1 April 2023

Identifiers

DOI

10.1093/NAR/GKY379

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/AfganBBBBCCCCGG18

27 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790989%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

PubMed publication ID

29790989

1 reference