(Q56225273)

1

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Philippe H Hünenberger

object named as

Philippe H. Hünenberger

2

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Wilfred F van Gunsteren

8

object named as

Wilfred F. van Gunsteren

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author name string

Mika A. Kastenholz

3

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Vincent Kräutler

4

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Thomas Lenz

5

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Roberto D. Lins

Journal of Computational Chemistry

6

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publication date

15 March 2005

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published in

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volume

26

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issue

7

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page(s)

725-737

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cites work

Simulation and modeling of nucleic acid structure, dynamics and interactions

1 reference

Molecular dynamics simulations of biomolecules: long-range electrostatic effects

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Molecular dynamics simulation of nucleic acids

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Nucleic acids: theory and computer simulation, Y2K.

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Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

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Effect of artificial periodicity in simulations of biomolecules under Ewald boundary conditions: a continuum electrostatics study

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A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6

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Dipolar couplings as a probe of molecular dynamics and structure in solution

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The B-DNA dodecamer at high resolution reveals a spine of water on sodium

21 January 2018

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Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations

21 January 2018

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DNA structure: cations in charge?

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Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator

21 January 2018

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Comparison of MD simulations and NMR experiments for hen lysozyme. Analysis of local fluctuations, cooperative motions, and global changes

21 January 2018

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Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

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Determination of three-bond 1H3'-31P couplings in nucleic acids and protein-nucleic acid complexes by quantitative J correlation spectroscopy.

21 January 2018

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The structure of sodium thymonucleate fibres. I. The influence of water content

21 January 2018

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Conformational analysis of d(C3G3), a B-family duplex in solution

21 January 2018

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Crystal structures of A-DNA duplexes

21 January 2018

1 reference

The electrostatic potential of B-DNA.

21 January 2018

1 reference

Modeling DNA in aqueous solutions: theoretical and computer simulation studies on the ion atmosphere of DNA.

21 January 2018

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Sequence-specific binding of counterions to B-DNA.

21 January 2018

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Water and monovalent ions in the minor groove of B-DNA oligonucleotides as seen by NMR.

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DNA-cation interactions: The major and minor grooves are flexible ionophores.

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The Dickerson-Drew B-DNA Dodecamer Revisited at Atomic Resolution

21 January 2018

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A “Hydrat-Ion” Spine in a B-DNA Minor Groove

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1 reference

Crystal studies of B-DNA: the answers and the questions

21 January 2018

1 reference

Crystal and molecular structure of d(GTGCGCAC): investigation of the effects of base sequence on the conformation of octamer duplexes

21 January 2018

1 reference

Overall structure and sugar dynamics of a DNA dodecamer from homo- and heteronuclear dipolar couplings and 31P chemical shift anisotropy

21 January 2018

1 reference

DNA structure from A to B.

21 January 2018

1 reference

The structure of a stable intermediate in the A left-right-arrow B DNA helix transition

21 January 2018

1 reference

The extended and eccentric E-DNA structure induced by cytosine methylation or bromination

21 January 2018

1 reference

A crystallographic map of the transition from B-DNA to A-DNA.

21 January 2018

1 reference

Structure of the d(CGCCCGCGGGCG) dodecamer: a kinked A-DNA molecule showing some B-DNA features

21 January 2018

1 reference

Contact Electron‐Spin Coupling of Nuclear Magnetic Moments

21 January 2018

1 reference

Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy

21 January 2018

1 reference

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

21 January 2018

1 reference

A standard reference frame for the description of nucleic acid base-pair geometry.

21 January 2018

1 reference

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

Derivation of an improved simple point charge model for liquid water: SPC/A and SPC/L

21 January 2018

1 reference

journals/jcc/SoaresHKKLLOG05

21 January 2018

Identifiers

DOI

10.1002/JCC.20193

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DBLP publication ID

1 reference

DBLP Dataset 2021-01-02