(Q57247687)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15892955%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

title

Codon volatility does not reflect selective pressure on the HIV-1 genome (English)

1 reference

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11 January 2020

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15892955%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

Davey Smith

series ordinal

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15892955%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

1

Satish K Pillai

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15892955%20AND%20SRC:MED&resulttype=core&format=json

Sergei L. Kosakovsky Pond

11 January 2020

series ordinal

2

object named as

Sergei L Kosakovsky Pond

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15892955%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

author name string

Douglas D Richman

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15892955%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

language of work or name

English

0 references

publication date

1 June 2005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15892955%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

number of pages

7

1 reference

based on heuristic

inferred from page(s)

published in

Virology

0 references

volume

336

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15892955%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15892955%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

page(s)

137-143

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15892955%20AND%20SRC:MED&resulttype=core&format=json

Antigenically distinct conformations of CXCR4.

11 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2005.03.014

Secondary structure of DNA depends on base composition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2005.03.014

Evolutionary genomics: codon volatility does not detect selection.

7 January 2021

1 reference

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Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypes

7 January 2021

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Multiple sequence alignment with hierarchical clustering

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2005.03.014

The comparative method rules! Codon volatility cannot detect positive Darwinian selection using a single genome sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2005.03.014

Codon volatility as an indicator of positive selection: data from eukaryotic genome comparisons

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2005.03.014

Evolutionary genomics: codon bias and selection on single genomes.

7 January 2021

1 reference

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HIV-1 in genital tract and plasma of women: compartmentalization of viral sequences, coreceptor usage, and glycosylation

7 January 2021

1 reference

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Not so different after all: a comparison of methods for detecting amino acid sites under selection

7 January 2021

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HyPhy: hypothesis testing using phylogenies

7 January 2021

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GCUA: general codon usage analysis

7 January 2021

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Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application

7 January 2021

1 reference

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Codon usage bias and tRNA abundance in Drosophila

7 January 2021

1 reference

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Evolutionary genomics: detecting selection needs comparative data.

7 January 2021

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HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time

7 January 2021

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A new perspective on V3 phenotype prediction.

7 January 2021

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Semen-specific genetic characteristics of human immunodeficiency virus type 1 env.

7 January 2021

1 reference

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Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum

7 January 2021

1 reference

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The causes and consequences of HIV evolution

7 January 2021

1 reference

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Rapid evolution of the neutralizing antibody response to HIV type 1 infection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2005.03.014

A group of V3 sequences from human immunodeficiency virus type 1 subtype E non-syncytium-inducing, CCR5-using variants are resistant to positive selection pressure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2005.03.014

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

7 January 2021

1 reference

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Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

7 January 2021

1 reference

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Widespread adaptive evolution in the human immunodeficiency virus type 1 genome

7 January 2021

1 reference

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On the evolution of codon volatility

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2005.03.014

Human immunodeficiency virus type 1 recombination: rate, fidelity, and putative hot spots

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2005.03.014

Phenotype-associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2005.03.014

inferred from DOI database lookup

7 January 2021

based on heuristic

Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2005.03.014

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/J.VIROL.2005.03.014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15892955%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

1 reference