(Q58815917)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21261798%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

title

DNA-, rRNA- and mRNA-based stable isotope probing of aerobic methanotrophs in lake sediment (English)

1 reference

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20 January 2020

1 reference

1 reference

3

1 reference

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20 January 2020

4

Ralf Conrad

1 reference

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20 January 2020

2

Bianca Pommerenke

1 reference

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20 January 2020

author name string

Marc G Dumont

series ordinal

1

1 reference

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20 January 2020

publication date

24 January 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21261798%20AND%20SRC:MED&resulttype=core&format=json

Environmental Microbiology

20 January 2020

published in

1 reference

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20 January 2020

volume

13

1 reference

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20 January 2020

issue

5

1 reference

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20 January 2020

page(s)

1153-1167

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21261798%20AND%20SRC:MED&resulttype=core&format=json

Stable isotope probing: technical considerations when resolving (15)N-labeled RNA in gradients.

20 January 2020

cites work

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Fates of methane from different lake habitats: Connecting whole-lake budgets and CH4emissions

21 January 2018

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Revised Taxonomy of the Methanotrophs: Description of Methylobacter gen. nov., Emendation of Methylococcus, Validation of Methylosinus and Methylocystis Species, and a Proposal that the Family Methylococcaceae Includes Only the Group I Methanotrophs

21 January 2018

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Stable isotope probing with 15N achieved by disentangling the effects of genome G+C content and isotope enrichment on DNA density

21 January 2018

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mRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil

21 January 2018

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Technical considerations for the use of 15N-DNA stable-isotope probing for functional microbial activity in soils

21 January 2018

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Identity of active methanotrophs in landfill cover soil as revealed by DNA-stable isotope probing

21 January 2018

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Nutrient amendments in soil DNA stable isotope probing experiments reduce the observed methanotroph diversity

21 January 2018

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Identification of active methanotrophs in a landfill cover soil through detection of expression of 16S rRNA and functional genes.

21 January 2018

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Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands.

21 January 2018

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DNA buoyant density shifts during 15N-DNA stable isotope probing.

21 January 2018

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Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs

21 January 2018

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Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog.

21 January 2018

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Methylocella species are facultatively methanotrophic

21 January 2018

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Identification of a complete methane monooxygenase operon from soil by combining stable isotope probing and metagenomic analysis

21 January 2018

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Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis

21 January 2018

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Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia.

21 January 2018

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Methylocapsa aurea sp. nov., a facultative methanotroph possessing a particulate methane monooxygenase, and emended description of the genus Methylocapsa

21 January 2018

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13C-Labelling of lipids to investigate microbial communities in the environment.

21 January 2018

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The ultramicrobacterium "Elusimicrobium minutum" gen. nov., sp. nov., the first cultivated representative of the termite group 1 phylum

21 January 2018

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The biochemistry of methane oxidation

21 January 2018

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Quantification of gene expression in methanotrophs by competitive reverse transcription-polymerase chain reaction

21 January 2018

1 reference

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Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil

21 January 2018

1 reference

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Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mxaF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling

21 January 2018

1 reference

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Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell raman-fluorescence in situ hybridization.

21 January 2018

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Methane oxidation at 55 degrees C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum

21 January 2018

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Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures

21 January 2018

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High-resolution metagenomics targets specific functional types in complex microbial communities.

21 January 2018

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Nucleotide metabolism and its control in lactic acid bacteria

21 January 2018

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Methane monooxygenase gene expression mediated by methanobactin in the presence of mineral copper sources.

21 January 2018

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Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays.

21 January 2018

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Succession of methanotrophs in oxygen-methane counter-gradients of flooded rice paddies

21 January 2018

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ARB: a software environment for sequence data

21 January 2018

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Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients

21 January 2018

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Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic interactions with fungi and protozoa in oxic rice field soil

21 January 2018

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Molecular ecology techniques for the study of aerobic methanotrophs

21 January 2018

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RNA stable isotope probing, a novel means of linking microbial community function to phylogeny.

21 January 2018

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Insights into the fate of a 13C labelled phenol pulse for stable isotope probing (SIP) experiments.

21 January 2018

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The replication of DNA in Escherichia coli

21 January 2018

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Identification of the functionally active methanotroph population in a peat soil microcosm by stable-isotope probing

21 January 2018

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A methane-driven microbial food web in a wetland rice soil

21 January 2018

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Selective grazing of methanotrophs by protozoa in a rice field soil

21 January 2018

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Molecular biology and regulation of methane monooxygenase

21 January 2018

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Bacterial populations active in metabolism of C1 compounds in the sediment of Lake Washington, a freshwater lake

21 January 2018

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DNA stable-isotope probing.

21 January 2018

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Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics

21 January 2018

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pmoA-based analysis of methanotrophs in a littoral lake sediment reveals a diverse and stable community in a dynamic environment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2010.02415.X

Methanotrophy below pH 1 by a new Verrucomicrobia species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2010.02415.X

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2010.02415.X

Applying stable isotope probing of phospholipid fatty acids and rRNA in a Chinese rice field to study activity and composition of the methanotrophic bacterial communities in situ.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2010.02415.X

Stable-isotope probing as a tool in microbial ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2010.02415.X

Identification of active methylotroph populations in an acidic forest soil by stable-isotope probing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2010.02415.X

Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2010.02415.X

Comparison of aerobic methanotrophic communities in littoral and profundal sediments of Lake Constance by a molecular approach

21 January 2018

1 reference

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Characterization of growing microorganisms in soil by stable isotope probing with H218O.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2010.02415.X

Activity and composition of methanotrophic bacterial communities in planted rice soil studied by flux measurements, analyses of pmoA gene and stable isotope probing of phospholipid fatty acids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2010.02415.X

A rapid bootstrap algorithm for the RAxML Web servers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2010.02415.X

Biphasic kinetics of a methanotrophic community is a combination of growth and increased activity per cell.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2010.02415.X

DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2010.02415.X

Regulation of pyrimidine biosynthetic gene expression in bacteria: repression without repressors

21 January 2018

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RNA stable-isotope probing.

21 January 2018

1 reference

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Stable isotope probing of nucleic acids in methanotrophs and methylotrophs: A review

21 January 2018

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21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21261798%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference