(Q59807132)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30538680%20AND%20SRC:MED&resulttype=core&format=json

13 April 2020

title

A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex (English)

1 reference

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13 April 2020

1 reference

6

1 reference

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13 April 2020

Anzaan Dippenaar

7

1 reference

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13 April 2020

Mireia Coscolla

12

1 reference

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13 April 2020

Sébastien Gagneux

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30538680%20AND%20SRC:MED&resulttype=core&format=json

13 April 2020

author name string

Daniela Brites

1

1 reference

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13 April 2020

Chloé Loiseau

2

1 reference

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13 April 2020

Fabrizio Menardo

3

1 reference

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13 April 2020

Sonia Borrell

4

1 reference

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13 April 2020

Maria Beatrice Boniotti

5

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13 April 2020

Sven David Charles Parsons

8

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13 April 2020

Christian Beisel

9

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13 April 2020

Marcel A Behr

10

1 reference

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13 April 2020

Janet A Fyfe

11

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13 April 2020

language of work or name

English

0 references

publication date

27 November 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30538680%20AND%20SRC:MED&resulttype=core&format=json

Frontiers in Microbiology

13 April 2020

published in

1 reference

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13 April 2020

volume

9

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13 April 2020

page(s)

2820

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Creative Commons Attribution 4.0 International

13 April 2020

copyright license

start time

27 November 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ggtree

object named as

ggtree

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Diagnosis of Mycobacterium microti infections among humans by using novel genetic markers

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Isolation of Genomic DNA from Mycobacteria

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Wildlife disease reservoirs: the epidemiology of Mycobacterium bovis infection in the European badger (Meles meles) and other British mammals

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A new evolutionary scenario for the Mycobacterium tuberculosis complex

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Genomic deletions suggest a phylogeny for the Mycobacterium tuberculosis complex

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Bacterial artificial chromosome-based comparative genomic analysis identifies Mycobacterium microti as a natural ESAT-6 deletion mutant

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12 December 2020

Loss of RD1 contributed to the attenuation of the live tuberculosis vaccines Mycobacterium bovis BCG and Mycobacterium microti

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12 December 2020

The transmission of Mycobacterium bovis infection to cattle

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12 December 2020

Deletion of RD1 from Mycobacterium tuberculosis mimics bacille Calmette-Guérin attenuation

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12 December 2020

Tuberculosis in seals caused by a novel member of the Mycobacterium tuberculosis complex: Mycobacterium pinnipedii sp. nov

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12 December 2020

Genomic interrogation of the dassie bacillus reveals it as a unique RD1 mutant within the Mycobacterium tuberculosis complex

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APE: Analyses of Phylogenetics and Evolution in R language

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12 December 2020

Generalized tuberculosis in llamas (Lama glama) due to Mycobacterium microti

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12 December 2020

Genome structure in the vole bacillus, Mycobacterium microti, a member of the Mycobacterium tuberculosis complex with a low virulence for humans

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12 December 2020

Revisiting the evolution of Mycobacterium bovis

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12 December 2020

Ecotypes of the Mycobacterium tuberculosis complex

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12 December 2020

Variable host-pathogen compatibility in Mycobacterium tuberculosis

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12 December 2020

Emerging pathogens: the epidemiology and evolution of species jumps

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12 December 2020

Novel genetic polymorphisms that further delineate the phylogeny of the Mycobacterium tuberculosis complex

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12 December 2020

Bottlenecks and broomsticks: the molecular evolution of Mycobacterium bovis

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12 December 2020

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

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12 December 2020

Is Mycobacterium bovis in the environment important for the persistence of bovine tuberculosis?

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12 December 2020

Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development.

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12 December 2020

Effect size, confidence interval and statistical significance: a practical guide for biologists

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12 December 2020

adegenet: a R package for the multivariate analysis of genetic markers

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12 December 2020

High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography

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12 December 2020

African 1, an epidemiologically important clonal complex of Mycobacterium bovis dominant in Mali, Nigeria, Cameroon, and Chad

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12 December 2020

Myths and misconceptions: the origin and evolution of Mycobacterium tuberculosis

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12 December 2020

Mycobacterium microti: More diverse than previously thought

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12 December 2020

Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies.

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12 December 2020

Revisiting host preference in the Mycobacterium tuberculosis complex: experimental infection shows M. tuberculosis H37Rv to be avirulent in cattle

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12 December 2020

Fast and accurate long-read alignment with Burrows-Wheeler transform

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12 December 2020

Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved

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12 December 2020

Novel Mycobacterium tuberculosis complex pathogen, M. mungi

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12 December 2020

Clinical characteristics of the smooth tubercle bacilli 'Mycobacterium canettii' infection suggest the existence of an environmental reservoir

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12 December 2020

Mycobacterium africanum--review of an important cause of human tuberculosis in West Africa

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12 December 2020

Mycobacterium tuberculosis infection in grazing cattle in central Ethiopia.

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12 December 2020

Elephant-to-Human Transmission of Tuberculosis, 2009

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12 December 2020

Elephant-to-human transmission of tuberculosis, 2009

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12 December 2020

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

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12 December 2020

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

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12 December 2020

Bovine tuberculosis vaccine research: historical perspectives and recent advances.

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12 December 2020

The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex

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12 December 2020

Characterization of Mycobacterium orygis as M. tuberculosis complex subspecies

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12 December 2020

The distribution of Mycobacterium bovis infection in naturally infected badgers

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12 December 2020

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

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12 December 2020

Mycobacterium bovis: A Model Pathogen at the Interface of Livestock, Wildlife, and Humans

1 reference

12 December 2020

Transmission of Mycobacterium orygis (M. tuberculosis complex species) from a tuberculosis patient to a dairy cow in New Zealand

1 reference

12 December 2020

Infection of African buffalo (Syncerus caffer) by oryx bacillus, a rare member of the antelope clade of the Mycobacterium tuberculosis complex.

1 reference

12 December 2020

Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

1 reference

12 December 2020

HIV infection disrupts the sympatric host-pathogen relationship in human tuberculosis

1 reference

12 December 2020

Mycobacterial lineages causing pulmonary and extrapulmonary tuberculosis, Ethiopia.

1 reference

12 December 2020

Epidemiology and control of tuberculosis in Victoria, a low-burden state in south-eastern Australia, 2005-2010.

1 reference

12 December 2020

Novel Mycobacterium tuberculosis complex isolate from a wild chimpanzee

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12 December 2020

Zoonotic Mycobacterium bovis-induced tuberculosis in humans

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12 December 2020

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

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12 December 2020

Non-human sources of Mycobacterium tuberculosis

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12 December 2020

Novel cause of tuberculosis in meerkats, South Africa

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12 December 2020

Mycobacterium microti tuberculosis in its maintenance host, the field vole (Microtus agrestis): characterization of the disease and possible routes of transmission.

1 reference

12 December 2020

Trimmomatic: a flexible trimmer for Illumina sequence data

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12 December 2020

Detection and molecular characterization of Mycobacterium microti isolates in wild boar from northern Italy

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12 December 2020

Evolutionary history of tuberculosis shaped by conserved mutations in the PhoPR virulence regulator

1 reference

12 December 2020

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis

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12 December 2020

Impact of in vitro evolution on antigenic diversity of Mycobacterium bovis bacillus Calmette-Guerin (BCG)

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12 December 2020

KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes.

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12 December 2020

Co-evolution of Mycobacterium tuberculosis and Homo sapiens

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12 December 2020

Gene Loss Dominates As a Source of Genetic Variation within Clonal Pathogenic Bacterial Species

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12 December 2020

Whole genome sequence analysis of Mycobacterium suricattae.

1 reference

12 December 2020

Molecular characterization of Mycobacterium orygis isolates from wild animals of Nepal

1 reference

12 December 2020

Mycobacterium orygis-Associated Tuberculosis in Free-Ranging Rhinoceros, Nepal, 2015

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12 December 2020

Use of bacterial whole-genome sequencing to investigate local persistence and spread in bovine tuberculosis

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12 December 2020

Animal-adapted members of the Mycobacterium tuberculosis complex endemic to the southern African subregion.

1 reference

12 December 2020

Zoonotic tuberculosis in human beings caused by Mycobacterium bovis-a call for action.

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12 December 2020

Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages

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12 December 2020

Tuberculosis Caused by Mycobacterium orygis in Dairy Cattle and Captured Monkeys in Bangladesh: a New Scenario of Tuberculosis in South Asia

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12 December 2020

Using whole genome sequencing to investigate transmission in a multi-host system: bovine tuberculosis in New Zealand

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12 December 2020

New Mycobacterium tuberculosis Complex Sublineage, Brazzaville, Congo

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12 December 2020

Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97.

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12 December 2020

Mycobacterium orygis Lymphadenitis in New York, USA.

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12 December 2020

The Nature and Evolution of Genomic Diversity in the Mycobacterium tuberculosis Complex.

1 reference

12 December 2020

The Biology and Epidemiology of Mycobacterium africanum

1 reference

12 December 2020

Mycobacterium tuberculosis Complex Members Adapted to Wild and Domestic Animals

1 reference

12 December 2020

Phylogenomic analysis of the species of the Mycobacterium tuberculosis complex demonstrates that Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii are later heterotypic synonyms of

1 reference

12 December 2020

Complete Genome Sequencing of Mycobacterium bovis SP38 and Comparative Genomics of Mycobacterium bovis and M. tuberculosis Strains.

1 reference

12 December 2020

Mutations in ppe38 block PE_PGRS secretion and increase virulence of Mycobacterium tuberculosis.

1 reference

12 December 2020

Experimental infection of cattle with Mycobacterium tuberculosis isolates shows the attenuation of the human tubercle bacillus for cattle.

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12 December 2020

Ecology and evolution of Mycobacterium tuberculosis.

1 reference

12 December 2020

Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity.

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12 December 2020

Prevalence of Bovine Tuberculosis in India: A systematic review and meta-analysis.

1 reference

12 December 2020

RD5-mediated lack of PE_PGRS and PPE-MPTR export in BCG vaccine strains results in strong reduction of antigenic repertoire but little impact on protection.

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12 December 2020

Identifiers

DOI

10.3389/FMICB.2018.02820

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30538680%20AND%20SRC:MED&resulttype=core&format=json

13 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30538680%20AND%20SRC:MED&resulttype=core&format=json

13 April 2020

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