(Q61797739)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30732613%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

title

Transcriptome, proteome and draft genome of Euglena gracilis (English)

1 reference

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22 April 2020

0 references

0 references

0 references

Euglena gracilis

1 reference

3

1 reference

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22 April 2020

Petr Soukal

7

1 reference

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22 April 2020

Carlos Santana-Molina

8

1 reference

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22 April 2020

Ellis C O'Neill

9

1 reference

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22 April 2020

Sara Silva Pereira

14

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22 April 2020

Damien Devos

16

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22 April 2020

Mark Carrington

21

1 reference

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22 April 2020

Mark C. Field

25

1 reference

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22 April 2020

17

Julius Lukeš

1 reference

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22 April 2020

Anna M G Novák Vanclová

5

object named as

Anna M G Novák Vanclová

1 reference

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22 April 2020

23

Joel B Dacks

1 reference

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22 April 2020

author name string

ThankGod E Ebenezer

1

1 reference

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22 April 2020

Martin Zoltner

2

1 reference

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22 April 2020

Anna Nenarokova

4

1 reference

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22 April 2020

Binod Prasad

6

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22 April 2020

Nerissa N Nankissoor

10

1 reference

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22 April 2020

Nithya Vadakedath

11

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22 April 2020

Viktor Daiker

12

1 reference

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22 April 2020

Samson Obado

13

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22 April 2020

Andrew P Jackson

15

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22 April 2020

Michael Lebert

18

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22 April 2020

Sue Vaughan

19

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22 April 2020

Vladimίr Hampl

20

1 reference

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22 April 2020

Michael L Ginger

22

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22 April 2020

Steven Kelly

24

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22 April 2020

language of work or name

English

0 references

publication date

7 February 2019

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22 April 2020

1 reference

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22 April 2020

volume

17

1 reference

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22 April 2020

issue

1

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22 April 2020

page(s)

11

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Creative Commons Attribution 4.0 International

22 April 2020

copyright license

start time

7 February 2019

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s12915-019-0626-8

0 references

cites work

The characterization of Euglena gracilis DNA by its reassociation kinetics

1 reference

12 December 2020

Short leader sequences may be transferred from small RNAs to pre-mature mRNAs by trans-splicing in Euglena

1 reference

12 December 2020

Post-transcriptional regulation by light of the biosynthesis ofEuglena ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit

1 reference

12 December 2020

Structure and expression of the Euglena gracilis nuclear gene coding for the translation elongation factor EF-1 alpha

1 reference

12 December 2020

Sequence of a cDNA clone encoding beta tubulin from Euglena gracilis.

1 reference

12 December 2020

Regulation of cell shape in Euglena gracilis. IV. Localization of actin, myosin and calmodulin.

1 reference

12 December 2020

Composition and structure of zinc-deficient Euglena gracilis chromatin

1 reference

12 December 2020

Histone formation, gene expression, and zinc deficiency in Euglena gracilis

1 reference

12 December 2020

Tubulin genes in the algal protist Euglena gracilis

1 reference

12 December 2020

Structure and expression of a cDNA encoding a histone H2A from Euglena gracilis

1 reference

12 December 2020

Complete sequence of Euglena gracilis chloroplast DNA

1 reference

12 December 2020

ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites

1 reference

12 December 2020

A new twist in trypanosome RNA metabolism: cis-splicing of pre-mRNA.

1 reference

12 December 2020

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

12 December 2020

Base J originally found in kinetoplastida is also a minor constituent of nuclear DNA of Euglena gracilis

1 reference

12 December 2020

The photoreceptor protein of Euglena gracilis

1 reference

12 December 2020

Cache - a signaling domain common to animal Ca(2+)-channel subunits and a class of prokaryotic chemotaxis receptors

1 reference

12 December 2020

Analysis of Euglena gracilis alpha-, beta- and gamma-tubulin genes: introns and pre-mRNA maturation.

1 reference

12 December 2020

MRBAYES: Bayesian inference of phylogenetic trees

1 reference

12 December 2020

A blue-light-activated adenylyl cyclase mediates photoavoidance in Euglena gracilis

1 reference

12 December 2020

Kinetoplast DNA network: evolution of an improbable structure

1 reference

12 December 2020

The use of lead citrate at high pH as an electron-opaque stain in electron microscopy

1 reference

12 December 2020

Photoreceptor proteins, "star actors of modern times": a review of the functional dynamics in the structure of representative members of six different photoreceptor families

1 reference

12 December 2020

PrediSi: prediction of signal peptides and their cleavage positions

1 reference

12 December 2020

The methylerythritol phosphate pathway contributes to carotenoid but not phytol biosynthesis in Euglena gracilis

1 reference

12 December 2020

Automated generation of heuristics for biological sequence comparison

1 reference

12 December 2020

The Genome of the African Trypanosome Trypanosoma brucei

1 reference

12 December 2020

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

1 reference

12 December 2020

The Complete Chloroplast Genome of the Chlorarachniophyte Bigelowiella natans: Evidence for Independent Origins of Chlorarachniophyte and Euglenid Secondary Endosymbionts

1 reference

12 December 2020

Evolution of tubulin gene arrays in Trypanosomatid parasites: genomic restructuring in Leishmania.

1 reference

12 December 2020

Gene expression patterns in Euglena gracilis: insights into the cellular response to environmental stress

1 reference

12 December 2020

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

1 reference

12 December 2020

Locating proteins in the cell using TargetP, SignalP and related tools

1 reference

12 December 2020

KAAS: an automatic genome annotation and pathway reconstruction server

1 reference

12 December 2020

Molecular mechanisms of resistance to heavy metals in the protist Euglena gracilis.

1 reference

12 December 2020

Clustal W and Clustal X version 2.0

1 reference

12 December 2020

The origin of plastids

1 reference

12 December 2020

The promastigote surface antigen gene family of the Leishmania parasite: differential evolution by positive selection and recombination

1 reference

12 December 2020

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

12 December 2020

Insights into the genome sequence of a free-living Kinetoplastid: Bodo saltans (Kinetoplastida: Euglenozoa)

1 reference

12 December 2020

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

1 reference

12 December 2020

TriTrypDB: a functional genomic resource for the Trypanosomatidae

1 reference

12 December 2020

TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

1 reference

12 December 2020

BEDTools: a flexible suite of utilities for comparing genomic features

1 reference

12 December 2020

Comprehensive analysis of HAMP domains: implications for transmembrane signal transduction

1 reference

12 December 2020

The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility

1 reference

12 December 2020

Molecular characterization of a calmodulin involved in the signal transduction chain of gravitaxis in Euglena gracilis.

1 reference

12 December 2020

FastTree 2--approximately maximum-likelihood trees for large alignments

1 reference

12 December 2020

A comparative proteomic analysis reveals a new bi-lobe protein required for bi-lobe duplication and cell division in Trypanosoma brucei

1 reference

12 December 2020

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

1 reference

12 December 2020

Scaffolding pre-assembled contigs using SSPACE

1 reference

12 December 2020

The resistance of DMC1 D-loops to dissociation may account for the DMC1 requirement in meiosis

1 reference

12 December 2020

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

1 reference

12 December 2020

Eukaryote-to-eukaryote gene transfer gives rise to genome mosaicism in euglenids

1 reference

12 December 2020

Regulatory elements involved in the post-transcriptional control of stage-specific gene expression in Trypanosoma cruzi: a review

1 reference

12 December 2020

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

1 reference

12 December 2020

SignalP 4.0: discriminating signal peptides from transmembrane regions

1 reference

12 December 2020

Mitochondrial Preprotein Translocase of Trypanosomatids Has a Bacterial Origin

1 reference

12 December 2020

Efficient de novo assembly of large genomes using compressed data structures

1 reference

12 December 2020

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

1 reference

12 December 2020

UV-B photoreceptor-mediated signalling in plants.

1 reference

12 December 2020

Morphology of the trypanosome bilobe, a novel cytoskeletal structure

1 reference

12 December 2020

Fast gapped-read alignment with Bowtie 2

1 reference

12 December 2020

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

1 reference

12 December 2020

Adenylate cyclases of Trypanosoma brucei inhibit the innate immune response of the host

1 reference

12 December 2020

Tom40 is likely common to all mitochondria

1 reference

12 December 2020

Quantitative RNA-Seq analysis in non-model species: assessing transcriptome assemblies as a scaffold and the utility of evolutionary divergent genomic reference species

1 reference

12 December 2020

AT_CHLORO: A Chloroplast Protein Database Dedicated to Sub-Plastidial Localization

1 reference

12 December 2020

The Revised Classification of Eukaryotes

1 reference

12 December 2020

CD-HIT: accelerated for clustering the next-generation sequencing data

1 reference

12 December 2020

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.

1 reference

12 December 2020

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

1 reference

12 December 2020

Light detection and signal transduction in the BLUF photoreceptors

1 reference

12 December 2020

Novel bilobe components in Trypanosoma brucei identified using proximity-dependent biotinylation.

1 reference

12 December 2020

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

1 reference

12 December 2020

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

1 reference

12 December 2020

Assessing De Novo transcriptome assembly metrics for consistency and utility

1 reference

12 December 2020

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

1 reference

12 December 2020

Paratrypanosoma Is a Novel Early-Branching Trypanosomatid

1 reference

12 December 2020

Chlorophyll biosynthesis from glutamate or 5-aminolevulinate in intact Euglena chloroplasts.

1 reference

12 December 2020

Distribution of conventional and nonconventional introns in tubulin (α and β) genes of euglenids.

1 reference

12 December 2020

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

1 reference

12 December 2020

InterProScan 5: genome-scale protein function classification

1 reference

12 December 2020

The mitochondrial respiratory chain of the secondary green alga Euglena gracilis shares many additional subunits with parasitic Trypanosomatidae.

1 reference

12 December 2020

Discovery of unconventional kinetochores in kinetoplastids.

1 reference

12 December 2020

Trimmomatic: a flexible trimmer for Illumina sequence data

1 reference

12 December 2020

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.

1 reference

12 December 2020

In vitro evaluation of a soluble Leishmania promastigote surface antigen as a potential vaccine candidate against human leishmaniasis

1 reference

12 December 2020

High-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC proteomics.

1 reference

12 December 2020

Evolution of parasitism in kinetoplastid flagellates.

1 reference

12 December 2020

Motility and more: the flagellum of Trypanosoma brucei

1 reference

12 December 2020

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

1 reference

12 December 2020

Evolution, dynamics and specialized functions of glycosomes in metabolism and development of trypanosomatids

1 reference

12 December 2020

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

12 December 2020

The role of phosphoglycans in the susceptibility of Leishmania mexicana to the temporin family of anti-microbial peptides.

1 reference

12 December 2020

RNA-binding proteins involved in post-transcriptional regulation in bacteria

1 reference

12 December 2020

Identification of protein coding regions in RNA transcripts

1 reference

12 December 2020

Architecture of a Host-Parasite Interface: Complex Targeting Mechanisms Revealed Through Proteomics

1 reference

12 December 2020

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

1 reference

12 December 2020

Proteomic identification of novel cytoskeletal proteins associated with TbPLK, an essential regulator of cell morphogenesis in Trypanosoma brucei

1 reference

12 December 2020

OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy

1 reference

12 December 2020

The transcriptome of Euglena gracilis reveals unexpected metabolic capabilities for carbohydrate and natural product biochemistry.

1 reference

12 December 2020

Effect of Metals, Metalloids and Metallic Nanoparticles on Microalgae Growth and Industrial Product Biosynthesis: A Review

1 reference

12 December 2020

Peeping at TOMs-Diverse Entry Gates to Mitochondria Provide Insights into the Evolution of Eukaryotes

1 reference

12 December 2020

KEGG as a reference resource for gene and protein annotation

1 reference

12 December 2020

The khmer software package: enabling efficient nucleotide sequence analysis

1 reference

12 December 2020

Unexpectedly Streamlined Mitochondrial Genome of the Euglenozoan Euglena gracilis

1 reference

12 December 2020

Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid.

1 reference

12 December 2020

Kinetoplastid Phylogenomics Reveals the Evolutionary Innovations Associated with the Origins of Parasitism

1 reference

12 December 2020

Interactome Mapping Reveals the Evolutionary History of the Nuclear Pore Complex

1 reference

12 December 2020

Intermediate introns in nuclear genes of euglenids - are they a distinct type?

1 reference

12 December 2020

De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions

1 reference

12 December 2020

The Trypanosome Flagellar Pocket Collar and Its Ring Forming Protein-TbBILBO1

1 reference

12 December 2020

Gene family phylogeny and the evolution of parasite cell surfaces

1 reference

12 December 2020

From simple to supercomplex: mitochondrial genomes of euglenozoan protists

1 reference

12 December 2020

High-Efficiency Isolation of Nuclear Envelope Protein Complexes from Trypanosomes.

1 reference

12 December 2020

A Conserved DNA Repeat Promotes Selection of a Diverse Repertoire of Trypanosoma brucei Surface Antigens from the Genomic Archive

1 reference

12 December 2020

Differential remodelling of peroxisome function underpins the environmental and metabolic adaptability of diplonemids and kinetoplastids.

1 reference

12 December 2020

Ancient Eukaryotic Origin and Evolutionary Plasticity of Nuclear Lamina

1 reference

12 December 2020

Efficient selective breeding of live oil-rich Euglena gracilis with fluorescence-activated cell sorting.

1 reference

12 December 2020

Fatty acid and metabolomic profiling approaches differentiate heterotrophic and mixotrophic culture conditions in a microalgal food supplement 'Euglena'

1 reference

12 December 2020

The Perseus computational platform for comprehensive analysis of (prote)omics data

1 reference

12 December 2020

Conservation and divergence within the clathrin interactome of Trypanosoma cruzi.

1 reference

12 December 2020

Exploiting the Achilles' heel of membrane trafficking in trypanosomes

1 reference

12 December 2020

Extreme Diversity of Diplonemid Eukaryotes in the Ocean

1 reference

12 December 2020

KEGG: new perspectives on genomes, pathways, diseases and drugs

1 reference

12 December 2020

Trypanosome outer kinetochore proteins suggest conservation of chromosome segregation machinery across eukaryotes.

1 reference

12 December 2020

Salmon provides fast and bias-aware quantification of transcript expression

1 reference

12 December 2020

GenomeScope: Fast reference-free genome profiling from short reads.

1 reference

12 December 2020

Evolution of the endomembrane systems of trypanosomatids - conservation and specialisation.

1 reference

12 December 2020

Euglena gracilis Genome and Transcriptome: Organelles, Nuclear Genome Assembly Strategies and Initial Features

1 reference

12 December 2020

Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome

1 reference

12 December 2020

Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids.

1 reference

12 December 2020

Secondary Plastids of Euglenids and Chlorarachniophytes Function with a Mix of Genes of Red and Green Algal Ancestry

1 reference

12 December 2020

RNA-Seq employing a novel rRNA depletion strategy reveals a rich repertoire of snoRNAs in Euglena gracilis including box C/D and Ψ-guide RNAs targeting the modification of rRNA extremities

1 reference

12 December 2020

The Pfam protein families database in 2019

1 reference

12 December 2020

10.1186/S12915-019-0626-8

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30732613%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

22 April 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12915-019-0626-8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30732613%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

1 reference