(Q63379429)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

title

NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

Next-generation sequencing

1 May 2020

main subject

0 references

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Hauke Smidt

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

1

Javier Ramiro-Garcia

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

4

Detmer Sipkema

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

author name string

Christos Giatsis

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Erwin G Zoetendal

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Peter J Schaap

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

language of work or name

English

0 references

publication date

22 July 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

page(s)

1791

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

1 May 2020

copyright license

start time

22 July 2016

1 reference

April 2022 Public Data File from Crossref

Creative Commons Attribution 4.0 International

start time

23 November 2018

1 reference

April 2022 Public Data File from Crossref

0 references

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Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses

1 reference

12 December 2020

Microbial ecology and evolution: a ribosomal RNA approach

1 reference

12 December 2020

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology

1 reference

12 December 2020

UniFrac: a new phylogenetic method for comparing microbial communities

1 reference

12 December 2020

Predicting microbial species richness

1 reference

12 December 2020

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

12 December 2020

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

1 reference

12 December 2020

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

1 reference

12 December 2020

Short pyrosequencing reads suffice for accurate microbial community analysis

1 reference

12 December 2020

The role of the phylogenetic diversity measure, PD, in bio-informatics: getting the definition right.

1 reference

12 December 2020

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults

1 reference

12 December 2020

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

1 reference

12 December 2020

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

1 reference

12 December 2020

Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies

1 reference

12 December 2020

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

1 reference

12 December 2020

A human gut microbial gene catalogue established by metagenomic sequencing

1 reference

12 December 2020

QIIME allows analysis of high-throughput community sequencing data

1 reference

12 December 2020

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

1 reference

12 December 2020

Search and clustering orders of magnitude faster than BLAST

1 reference

12 December 2020

1 reference

12 December 2020

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

1 reference

12 December 2020

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

1 reference

12 December 2020

A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis

1 reference

12 December 2020

ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time

1 reference

12 December 2020

Illumina-based analysis of microbial community diversity

1 reference

12 December 2020

Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

1 reference

12 December 2020

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

1 reference

12 December 2020

Structure, function and diversity of the healthy human microbiome

1 reference

12 December 2020

Evaluation of 16S rDNA-based community profiling for human microbiome research

1 reference

12 December 2020

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

1 reference

12 December 2020

UPARSE: highly accurate OTU sequences from microbial amplicon reads

1 reference

12 December 2020

Comparison of microbial diversity determined with the same variable tag sequence extracted from two different PCR amplicons

1 reference

12 December 2020

Ribosomal Database Project: data and tools for high throughput rRNA analysis

1 reference

12 December 2020

The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks

1 reference

12 December 2020

Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations

1 reference

12 December 2020

Limits to robustness and reproducibility in the demarcation of operational taxonomic units

1 reference

12 December 2020

The Earth Microbiome project: successes and aspirations

1 reference

12 December 2020

Swarm: robust and fast clustering method for amplicon-based studies

1 reference

12 December 2020

Inconsistent Denoising and Clustering Algorithms for Amplicon Sequence Data.

1 reference

12 December 2020

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

1 reference

12 December 2020

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

1 reference

12 December 2020

Primer and platform effects on 16S rRNA tag sequencing

1 reference

12 December 2020

De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units

1 reference

12 December 2020

Development of an Analysis Pipeline Characterizing Multiple Hypervariable Regions of 16S rRNA Using Mock Samples

1 reference

12 December 2020

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis.

1 reference

12 December 2020

DADA2: High-resolution sample inference from Illumina amplicon data

1 reference

12 December 2020

Accuracy of microbial community diversity estimated by closed- and open-reference OTUs

1 reference

12 December 2020

10.12688/F1000RESEARCH.9227.1

Identifiers

DOI

0 references

10.12688/F1000RESEARCH.9227.2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30918626%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

PubMed publication ID

30918626

1 reference