(Q64099401)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31009451%20AND%20SRC:MED&resulttype=core&format=json

11 April 2020

title

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31009451%20AND%20SRC:MED&resulttype=core&format=json

11 April 2020

main subject

modeling and simulation

0 references

author

Jean-Christophe Lachance

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31009451%20AND%20SRC:MED&resulttype=core&format=json

11 April 2020

Laurence Yang

4

1 reference

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11 April 2020

Anand Sastry

5

1 reference

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11 April 2020

Bernhard Palsson

7

1 reference

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11 April 2020

Adam M. Feist

9

1 reference

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11 April 2020

Zachary King

10

1 reference

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11 April 2020

Pierre-Étienne Jacques

11

1 reference

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11 April 2020

3

Jonathan M Monk

1 reference

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11 April 2020

2

Colton J Lloyd

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31009451%20AND%20SRC:MED&resulttype=core&format=json

11 April 2020

6

Yara Seif

1 reference

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11 April 2020

author name string

Sébastien Rodrigue

8

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11 April 2020

publication date

22 April 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31009451%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

11 April 2020

published in

1 reference

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11 April 2020

volume

15

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11 April 2020

issue

4

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11 April 2020

page(s)

e1006971

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Creative Commons Attribution 4.0 International

11 April 2020

copyright license

start time

22 April 2019

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Genetic engineering in vivo using translocatable drug-resistance elements. New methods in bacterial genetics

1 reference

12 December 2020

The function of ubiquinone in Escherichia coli

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Growth of the stress-bearing and shape-maintaining murein sacculus of Escherichia coli.

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Optimization-based framework for inferring and testing hypothesized metabolic objective functions

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Exploring the diversity of complex metabolic networks.

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Systems approach to refining genome annotation

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Optimization based automated curation of metabolic reconstructions

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12 December 2020

Predicting biological system objectives de novo from internal state measurements

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12 December 2020

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

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GrowMatch: an automated method for reconciling in silico/in vivo growth predictions

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Pathway identification by network pruning in the metabolic network of Escherichia coli

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A protocol for generating a high-quality genome-scale metabolic reconstruction

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12 December 2020

What is flux balance analysis?

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12 December 2020

The biomass objective function

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12 December 2020

Systematizing the generation of missing metabolic knowledge

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12 December 2020

Interdependence of cell growth and gene expression: origins and consequences.

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12 December 2020

Metabolic capabilities of Escherichia coli: I. synthesis of biosynthetic precursors and cofactors.

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12 December 2020

Large-scale 13C-flux analysis reveals distinct transcriptional control of respiratory and fermentative metabolism in Escherichia coli

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12 December 2020

Condition-dependent cell volume and concentration of Escherichia coli to facilitate data conversion for systems biology modeling

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12 December 2020

Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED.

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12 December 2020

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

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12 December 2020

Optimizing genome-scale network reconstructions

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12 December 2020

Using Genome-scale Models to Predict Biological Capabilities

1 reference

12 December 2020

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

1 reference

12 December 2020

Biomass composition: the "elephant in the room" of metabolic modelling

1 reference

12 December 2020

MetaNetX/MNXref--reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks

1 reference

12 December 2020

The quantitative and condition-dependent Escherichia coli proteome

1 reference

12 December 2020

An Unexpected Route to an Essential Cofactor: Escherichia coli Relies on Threonine for Thiamine Biosynthesis

1 reference

12 December 2020

Mapping the landscape of metabolic goals of a cell

1 reference

12 December 2020

What do cells actually want?

1 reference

12 December 2020

A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria

1 reference

12 December 2020

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.

1 reference

12 December 2020

Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes

1 reference

12 December 2020

Optimal classifier for imbalanced data using Matthews Correlation Coefficient metric

1 reference

12 December 2020

iML1515, a knowledgebase that computes Escherichia coli traits.

1 reference

12 December 2020

Standardizing biomass reactions and ensuring complete mass balance in genome-scale metabolic models.

1 reference

12 December 2020

Mutant phenotypes for thousands of bacterial genes of unknown function

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1006971

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31009451%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/LachanceLMYSSPR19

11 April 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31009451%20AND%20SRC:MED&resulttype=core&format=json

11 April 2020

PubMed publication ID

31009451

1 reference