(Q64226989)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514982%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

title

Viral RNA structure-based strategies to manipulate translation (English)

1 reference

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12 April 2020

2

1 reference

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12 April 2020

author name string

Zane A Jaafar

series ordinal

1

1 reference

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12 April 2020

language of work or name

English

0 references

publication date

1 January 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514982%20AND%20SRC:MED&resulttype=core&format=json

Nature Reviews Microbiology

12 April 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514982%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

volume

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514982%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

issue

2

1 reference

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12 April 2020

page(s)

110-123

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https://scigraph.springernature.com/pub.10.1038/s41579-018-0117-x

12 April 2020

exact match

0 references

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Widespread distribution and structural diversity of Type IV IRESs in members of Picornaviridae

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7 January 2021

Toward a structural understanding of IRES RNA function

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7 January 2021

Commandeering the Ribosome: Lessons Learned from Dicistroviruses about Translation

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7 January 2021

Mechanism of translation initiation by Dicistroviridae IGR IRESs

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7 January 2021

Initiation of translation in bacteria by a structured eukaryotic IRES RNA

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7 January 2021

Structural basis for ribosome recruitment and manipulation by a viral IRES RNA.

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7 January 2021

Structure of the ribosome-bound cricket paralysis virus IRES RNA.

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7 January 2021

Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor.

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7 January 2021

Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome

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7 January 2021

tRNA-mimicry in IRES-mediated translation and recoding

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7 January 2021

tRNA–mRNA mimicry drives translation initiation from a viral IRES

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7 January 2021

Regulation of internal ribosomal entry site-mediated translation by phosphorylation of the translation initiation factor eIF2alpha

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7 January 2021

Cryo-EM of ribosomal 80S complexes with termination factors reveals the translocated cricket paralysis virus IRES.

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7 January 2021

Initiation of Translation by Cricket Paralysis Virus IRES Requires Its Translocation in the Ribosome

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7 January 2021

A dynamic RNA loop in an IRES affects multiple steps of elongation factor-mediated translation initiation

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7 January 2021

Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome

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7 January 2021

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7 January 2021

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7 January 2021

eIF2-dependent and eIF2-independent modes of initiation on the CSFV IRES: a common role of domain II

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7 January 2021

Cryo-EM structure of Hepatitis C virus IRES bound to the human ribosome at 3.9-Å resolution

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7 January 2021

Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA

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7 January 2021

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7 January 2021

Understanding the potential of hepatitis C virus internal ribosome entry site domains to modulate translation initiation via their structure and function.

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7 January 2021

A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs

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7 January 2021

Mechanism of ribosome recruitment by hepatitis C IRES RNA

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7 January 2021

HCV IRES manipulates the ribosome to promote the switch from translation initiation to elongation

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7 January 2021

HCV IRES domain IIb affects the configuration of coding RNA in the 40S subunit's decoding groove

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7 January 2021

HCV and CSFV IRES domain II mediate eIF2 release during 80S ribosome assembly

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7 January 2021

Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit

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7 January 2021

eIF2A mediates translation of hepatitis C viral mRNA under stress conditions

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7 January 2021

Activities of Ligatin and MCT-1/DENR in eukaryotic translation initiation and ribosomal recycling

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7 January 2021

GTP-independent tRNA delivery to the ribosomal P-site by a novel eukaryotic translation factor

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7 January 2021

Factor requirements for translation initiation on the Simian picornavirus internal ribosomal entry site

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7 January 2021

The role of IRES trans-acting factors in regulating translation initiation

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7 January 2021

Structural insights into viral IRES-dependent translation mechanisms

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7 January 2021

Constitutive expression of human double-stranded RNA-activated p68 kinase in murine cells mediates phosphorylation of eukaryotic initiation factor 2 and partial resistance to encephalomyocarditis virus growth

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7 January 2021

Poliovirus switches to an eIF2-independent mode of translation during infection

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7 January 2021

Polypyrimidine tract binding protein stabilizes the encephalomyocarditis virus IRES structure via binding multiple sites in a unique orientation

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7 January 2021

Pyrimidine tract binding protein strongly stimulates in vitro encephalomyocarditis virus RNA translation at the level of preinitiation complex formation.

1 reference

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7 January 2021

Polypyrimidine tract-binding protein stimulates the poliovirus IRES by modulating eIF4G binding

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7 January 2021

The mechanism of translation initiation on Type 1 picornavirus IRESs

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7 January 2021

Evidence of reciprocal tertiary interactions between conserved motifs involved in organizing RNA structure essential for internal initiation of translation

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7 January 2021

Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation.

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7 January 2021

Structural organization of a viral IRES depends on the integrity of the GNRA motif.

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7 January 2021

Translation eukaryotic initiation factor 4G recognizes a specific structural element within the internal ribosome entry site of encephalomyocarditis virus RNA.

1 reference

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7 January 2021

IRES interaction with translation initiation factors: functional characterization of novel RNA contacts with eIF3, eIF4B, and eIF4GII.

1 reference

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7 January 2021

Translation of encephalomyocarditis virus RNA: parameters influencing the selection of the internal initiation site.

1 reference

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7 January 2021

Involvement of the aphthovirus RNA region located between the two functional AUGs in start codon selection

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7 January 2021

Prokaryotic-like cis elements in the cap-independent internal initiation of translation on picornavirus RNA

1 reference

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7 January 2021

Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA

1 reference

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7 January 2021

NMR structures of loop B RNAs from the stem-loop IV domain of the enterovirus internal ribosome entry site: a single C to U substitution drastically changes the shape and flexibility of RNA.

1 reference

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7 January 2021

An accurately preorganized IRES RNA structure enables eIF4G capture for initiation of viral translation

1 reference

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7 January 2021

Attachment of ribosomal complexes and retrograde scanning during initiation on the Halastavi árva virus IRES.

1 reference

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7 January 2021

Cell type specificity and structural determinants of IRES activity from the 5' leaders of different HIV-1 transcripts

1 reference

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7 January 2021

Translation initiation of the HIV-1 mRNA.

1 reference

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7 January 2021

Does HIV-1 mRNA 5'-untranslated region bear an internal ribosome entry site?

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

G-quadruplexes regulate Epstein-Barr virus-encoded nuclear antigen 1 mRNA translation

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Changed in translation: mRNA recoding by -1 programmed ribosomal frameshifting

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Mechanisms and implications of programmed translational frameshifting

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Comparative study of the effects of heptameric slippery site composition on -1 frameshifting among different eukaryotic systems.

1 reference

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7 January 2021

RNA dimerization plays a role in ribosomal frameshifting of the SARS coronavirus.

1 reference

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7 January 2021

Programmed Ribosomal Frameshifting in SIV Is Induced by a Highly Structured RNA Stem–Loop

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7 January 2021

Structure of the RNA signal essential for translational frameshifting in HIV-1

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https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

The human immunodeficiency virus type 1 ribosomal frameshifting site is an invariant sequence determinant and an important target for antiviral therapy

1 reference

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7 January 2021

Multiple Cis-acting elements modulate programmed -1 ribosomal frameshifting in Pea enation mosaic virus

1 reference

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7 January 2021

Structural and Functional Characterization of Programmed Ribosomal Frameshift Signals in West Nile Virus Strains Reveals High Structural Plasticity Among cis-Acting RNA Elements.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Programmed -1 frameshifting efficiency correlates with RNA pseudoknot conformational plasticity, not resistance to mechanical unfolding

1 reference

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7 January 2021

HIV-1 frameshift efficiency is primarily determined by the stability of base pairs positioned at the mRNA entrance channel of the ribosome

1 reference

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7 January 2021

Dynamic pathways of -1 translational frameshifting

1 reference

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7 January 2021

mRNA helicase activity of the ribosome

1 reference

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7 January 2021

Transactivation of programmed ribosomal frameshifting by a viral protein

1 reference

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7 January 2021

Efficient -2 frameshifting by mammalian ribosomes to synthesize an additional arterivirus protein

1 reference

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7 January 2021

A novel role for poly(C) binding proteins in programmed ribosomal frameshifting

1 reference

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7 January 2021

Characterization of Ribosomal Frameshifting in Theiler's Murine Encephalomyelitis Virus.

1 reference

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7 January 2021

Protein-directed ribosomal frameshifting temporally regulates gene expression

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Ribosomal frameshifting into an overlapping gene in the 2B-encoding region of the cardiovirus genome

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

The major 5' determinant in stop codon read-through involves two adjacent adenines

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Impact of the six nucleotides downstream of the stop codon on translation termination

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

UAG readthrough in mammalian cells: effect of upstream and downstream stop codon contexts reveal different signals

1 reference

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7 January 2021

Predominance of six different hexanucleotide recoding signals 3' of read-through stop codons.

1 reference

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7 January 2021

The signal for a leaky UAG stop codon in several plant viruses includes the two downstream codons

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Stimulation of stop codon readthrough: frequent presence of an extended 3' RNA structural element

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Characterization of the stop codon readthrough signal of Colorado tick fever virus segment 9 RNA.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

An equilibrium-dependent retroviral mRNA switch regulates translational recoding

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Evidence that a downstream pseudoknot is required for translational read-through of the Moloney murine leukemia virus gag stop codon

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Multifaceted regulation of translational readthrough by RNA replication elements in a tombusvirus

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

An RNA Element That Facilitates Programmed Ribosomal Readthrough in Turnip Crinkle Virus Adopts Multiple Conformations

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Misreading of termination codons in eukaryotes by natural nonsense suppressor tRNAs

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Characterization of the sequence element directing translation reinitiation in RNA of the calicivirus rabbit hemorrhagic disease virus

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

A bipartite sequence motif induces translation reinitiation in feline calicivirus RNA.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Translation termination reinitiation between open reading frame 1 (ORF1) and ORF2 enables capsid expression in a bovine norovirus without the need for production of viral subgenomic RNA.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

The importance of inter- and intramolecular base pairing for translation reinitiation on a eukaryotic bicistronic mRNA.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Multiple mechanisms of reinitiation on bicistronic calicivirus mRNAs

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

3' Cap-independent translation enhancers of positive-strand RNA plant viruses

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

3' cap-independent translation enhancers of plant viruses

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Non-canonical Translation in Plant RNA Viruses

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Structural and Functional Diversity of Plant Virus 3'-Cap-Independent Translation Enhancers (3'-CITEs).

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Structure and function of a cap-independent translation element that functions in either the 3' or the 5' untranslated region

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Oscillating kissing stem-loop interactions mediate 5' scanning-dependent translation by a viral 3'-cap-independent translation element

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7 January 2021

Tombusvirus recruitment of host translational machinery via the 3' UTR.

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7 January 2021

A viral sequence in the 3'-untranslated region mimics a 5' cap in facilitating translation of uncapped mRNA.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

A novel interaction of Cap-binding protein complexes eukaryotic initiation factor (eIF) 4F and eIF(iso)4F with a region in the 3'-untranslated region of satellite tobacco necrosis virus

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

The amazing diversity of cap-independent translation elements in the 3'-untranslated regions of plant viral RNAs

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Conservation of RNA structures enables TNV and BYDV 5' and 3' elements to cooperate synergistically in cap-independent translation

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

A sequence located 4.5 to 5 kilobases from the 5' end of the barley yellow dwarf virus (PAV) genome strongly stimulates translation of uncapped mRNA.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Structural plasticity of Barley yellow dwarf virus-like cap-independent translation elements in four genera of plant viral RNAs

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Recruitment of the 40S ribosome subunit to the 3'-untranslated region (UTR) of a viral mRNA, via the eIF4 complex, facilitates cap-independent translation

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Cation-dependent folding of 3' cap-independent translation elements facilitates interaction of a 17-nucleotide conserved sequence with eIF4G

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Eukaryotic translation initiation factor 4G (eIF4G) coordinates interactions with eIF4A, eIF4B, and eIF4E in binding and translation of the barley yellow dwarf virus 3' cap-independent translation element (BTE).

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

A translational enhancer element on the 3'-proximal end of the Panicum mosaic virus genome

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Structure of a viral cap-independent translation element that functions via high affinity binding to the eIF4E subunit of eIF4F.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

The cap-binding translation initiation factor, eIF4E, binds a pseudoknot in a viral cap-independent translation element

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Structural domains within the 3' untranslated region of Turnip crinkle virus.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Ribosome binding to a 5' translational enhancer is altered in the presence of the 3' untranslated region in cap-independent translation of turnip crinkle virus.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Differential use of 3'CITEs by the subgenomic RNA of Pea enation mosaic virus 2.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

The 3' untranslated region of Pea Enation Mosaic Virus contains two T-shaped, ribosome-binding, cap-independent translation enhancers

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Concerted action of two 3' cap-independent translation enhancers increases the competitive strength of translated viral genomes.

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3' UTR of turnip crinkle virus

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

The 3' end of Turnip crinkle virus contains a highly interactive structure including a translational enhancer that is disrupted by binding to the RNA-dependent RNA polymerase

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Viral tRNAs and tRNA-like structures

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Quantitative assessment of EF-1alpha.GTP binding to aminoacyl-tRNAs, aminoacyl-viral RNA, and tRNA shows close correspondence to the RNA binding properties of EF-Tu

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

The structural basis of transfer RNA mimicry and conformational plasticity by a viral RNA

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Multi-domain packing in the aminoacylatable 3' end of a plant viral RNA

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Entrapping ribosomes for viral translation: tRNA mimicry as a molecular Trojan horse

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Cap- and initiator tRNA-dependent initiation of TYMV polyprotein synthesis by ribosomes: evaluation of the Trojan horse model for TYMV RNA translation

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Long-distance kissing loop interactions between a 3' proximal Y-shaped structure and apical loops of 5' hairpins enhance translation of Saguaro cactus virus

1 reference

https://api.crossref.org/works/10.1038%2FS41579-018-0117-X

7 January 2021

Untranslated regions of diverse plant viral RNAs vary greatly in translation enhancement efficiency

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30514982

12 December 2020

inferred from PubMed ID database lookup

Folding behavior of a T-shaped, ribosome-binding translation enhancer implicated in a wide-spread conformational switch.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30514982

12 December 2020

inferred from PubMed ID database lookup

Translation of Sindbis Subgenomic mRNA is Independent of eIF2, eIF2A and eIF2D.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30514982

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/S41579-018-0117-X

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514982%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

12 April 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514982%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

PubMed publication ID

30514982

1 reference