(Q64907378)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

title

Transcriptomic insights on the virulence-controlling CsrA, BadR, RpoN, and RpoS regulatory networks in the Lyme disease spirochete (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Kathryn Lethbridge

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Brian Stevenson

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

author name string

Christina R Savage

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Trever C Smith

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Catherine A Brissette

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

Janakiram Seshu

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

publication date

30 August 2018

1 reference

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20 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

volume

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

page(s)

e0203286

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

20 April 2020

copyright license

start time

30 August 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ggplot2

object named as

ggplot2

2 references

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=6117026

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

RStudio

1 reference

18 June 2022

https://europepmc.org/article/PMC/6117026

inferred from PubMed Central ID database lookup

DESeq2

object named as

DESeq

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

1 reference

12 December 2020

Induction of an outer surface protein on Borrelia burgdorferi during tick feeding

1 reference

12 December 2020

Homology throughout the multiple 32-kilobase circular plasmids present in Lyme disease spirochetes.

1 reference

12 December 2020

Antigenic variation in Lyme disease borreliae by promiscuous recombination of VMP-like sequence cassettes

1 reference

12 December 2020

Cell-density-dependent expression of Borrelia burgdorferi lipoproteins in vitro

1 reference

12 December 2020

The global regulator CsrA of Escherichia coli is a specific mRNA-binding protein

1 reference

12 December 2020

The Borrelia burgdorferi circular plasmid cp26: conservation of plasmid structure and targeted inactivation of the ospC gene.

1 reference

12 December 2020

Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi

1 reference

12 December 2020

Decorin-binding protein of Borrelia burgdorferi is encoded within a two-gene operon and is protective in the murine model of Lyme borreliosis

1 reference

12 December 2020

Humoral immunity to Borrelia burgdorferi N40 decorin binding proteins during infection of laboratory mice

1 reference

12 December 2020

Global regulation by the small RNA-binding protein CsrA and the non-coding RNA molecule CsrB

1 reference

12 December 2020

Effects of environmental pH on membrane proteins in Borrelia burgdorferi.

1 reference

12 December 2020

A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi

1 reference

12 December 2020

Interdependence of environmental factors influencing reciprocal patterns of gene expression in virulent Borrelia burgdorferi

1 reference

12 December 2020

Correlation between plasmid content and infectivity in Borrelia burgdorferi

1 reference

12 December 2020

Decreased infectivity in Borrelia burgdorferi strain B31 is associated with loss of linear plasmid 25 or 28-1.

1 reference

12 December 2020

Artemis: sequence visualization and annotation

1 reference

12 December 2020

VraA (BBI16) protein of Borrelia burgdorferi is a surface-exposed antigen with a repetitive motif that confers partial protection against experimental Lyme borreliosis

1 reference

12 December 2020

Distinct regulatory pathways control expression of Borrelia burgdorferi infection-associated OspC and Erp surface proteins

1 reference

12 December 2020

Genetics and regulation of chitobiose utilization in Borrelia burgdorferi

1 reference

12 December 2020

Expression of Borrelia burgdorferi OspC and DbpA is controlled by a RpoN-RpoS regulatory pathway

1 reference

12 December 2020

Clonal polymorphism of Borrelia burgdorferi strain B31 MI: implications for mutagenesis in an infectious strain background

1 reference

12 December 2020

Preferential presence of decorin-binding protein B (BBA25) and BBA50 antibodies in cerebrospinal fluid of patients with neurologic Lyme disease

1 reference

12 December 2020

Infectious cycle analysis of a Borrelia burgdorferi mutant defective in transport of chitobiose, a tick cuticle component

1 reference

12 December 2020

Temporal analysis of the antigenic composition of Borrelia burgdorferi during infection in rabbit skin

1 reference

12 December 2020

Analysis of promoter elements involved in the transcriptional initiation of RpoS-dependent Borrelia burgdorferi genes

1 reference

12 December 2020

RpoS is not central to the general stress response in Borrelia burgdorferi but does control expression of one or more essential virulence determinants

1 reference

12 December 2020

Carbohydrate utilization by the Lyme borreliosis spirochete, Borrelia burgdorferi

1 reference

12 December 2020

Borrelia burgdorferi sigma54 is required for mammalian infection and vector transmission but not for tick colonization

1 reference

12 December 2020

Analysis of the ospC regulatory element controlled by the RpoN-RpoS regulatory pathway in Borrelia burgdorferi

1 reference

12 December 2020

Plasmid requirements for infection of ticks by Borrelia burgdorferi

1 reference

12 December 2020

Alternate sigma factor RpoS is required for the in vivo-specific repression of Borrelia burgdorferi plasmid lp54-borne ospA and lp6.6 genes

1 reference

12 December 2020

Fibronectin binding protein BBK32 of the Lyme disease spirochete promotes bacterial attachment to glycosaminoglycans

1 reference

12 December 2020

Delineating the requirement for the Borrelia burgdorferi virulence factor OspC in the mammalian host

1 reference

12 December 2020

Borrelia burgdorferi OspC protein required exclusively in a crucial early stage of mammalian infection

1 reference

12 December 2020

Transcriptional regulation of the Borrelia burgdorferi antigenically variable VlsE surface protein

1 reference

12 December 2020

Evidence that RpoS (sigmaS) in Borrelia burgdorferi is controlled directly by RpoN (sigma54/sigmaN).

1 reference

12 December 2020

Rapid clearance of Lyme disease spirochetes lacking OspC from skin

1 reference

12 December 2020

Evolving models of Lyme disease spirochete gene regulation

1 reference

12 December 2020

Identification of an ospC operator critical for immune evasion of Borrelia burgdorferi

1 reference

12 December 2020

Temperature-induced regulation of RpoS by a small RNA in Borrelia burgdorferi

1 reference

12 December 2020

Insights into the complex regulation of rpoS in Borrelia burgdorferi

1 reference

12 December 2020

Analysis of the RpoS regulon in Borrelia burgdorferi in response to mammalian host signals provides insight into RpoS function during the enzootic cycle

1 reference

12 December 2020

Both decorin-binding proteins A and B are critical for the overall virulence of Borrelia burgdorferi

1 reference

12 December 2020

Lyme borreliosis spirochete Erp proteins, their known host ligands, and potential roles in mammalian infection

1 reference

12 December 2020

Verification and dissection of the ospC operator by using flaB promoter as a reporter in Borrelia burgdorferi

1 reference

12 December 2020

Analyzing real-time PCR data by the comparative C(T) method

1 reference

12 December 2020

Transcriptional interplay among the regulators Rrp2, RpoN and RpoS in Borrelia burgdorferi.

1 reference

12 December 2020

Example of real-time quantitative reverse transcription-PCR (Q-RT-PCR) analysis of bacterial gene expression during mammalian infection: Borrelia burgdorferi in mouse tissues

1 reference

12 December 2020

Laboratory maintenance of Borrelia burgdorferi

1 reference

12 December 2020

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

12 December 2020

GuaA and GuaB are essential for Borrelia burgdorferi survival in the tick-mouse infection cycle

1 reference

12 December 2020

Overexpression of CsrA (BB0184) alters the morphology and antigen profiles of Borrelia burgdorferi

1 reference

12 December 2020

BosR (BB0647) governs virulence expression in Borrelia burgdorferi.

1 reference

12 December 2020

The BosR regulatory protein of Borrelia burgdorferi interfaces with the RpoS regulatory pathway and modulates both the oxidative stress response and pathogenic properties of the Lyme disease spirochete

1 reference

12 December 2020

Identification and function of the RNA chaperone Hfq in the Lyme disease spirochete Borrelia burgdorferi.

1 reference

12 December 2020

Tackling the widespread and critical impact of batch effects in high-throughput data

1 reference

12 December 2020

Role of acetyl-phosphate in activation of the Rrp2-RpoN-RpoS pathway in Borrelia burgdorferi

1 reference

12 December 2020

CsrA modulates levels of lipoproteins and key regulators of gene expression critical for pathogenic mechanisms of Borrelia burgdorferi

1 reference

12 December 2020

Inactivation of bb0184, which encodes carbon storage regulator A, represses the infectivity of Borrelia burgdorferi.

1 reference

12 December 2020

BosR (BB0647) controls the RpoN-RpoS regulatory pathway and virulence expression in Borrelia burgdorferi by a novel DNA-binding mechanism

1 reference

12 December 2020

Multiplex PCR as a tool for validating plasmid content of Borrelia burgdorferi.

1 reference

12 December 2020

Cyclic di-GMP is essential for the survival of the lyme disease spirochete in ticks

1 reference

12 December 2020

Borrelia burgdorferi requires glycerol for maximum fitness during the tick phase of the enzootic cycle

1 reference

12 December 2020

Gene regulation in Borrelia burgdorferi

1 reference

12 December 2020

Carbon storage regulator A (CsrA(Bb)) is a repressor of Borrelia burgdorferi flagellin protein FlaB.

1 reference

12 December 2020

BpaB and EbfC DNA-binding proteins regulate production of the Lyme disease spirochete's infection-associated Erp surface proteins

1 reference

12 December 2020

Of ticks, mice and men: understanding the dual-host lifestyle of Lyme disease spirochaetes

1 reference

12 December 2020

Changes in bacterial growth rate govern expression of the Borrelia burgdorferi OspC and Erp infection-associated surface proteins

1 reference

12 December 2020

Borrelia host adaptation Regulator (BadR) regulates rpoS to modulate host adaptation and virulence factors in Borrelia burgdorferi.

1 reference

12 December 2020

Influence of arthritis-related protein (BBF01) on infectivity of Borrelia burgdorferi B31.

1 reference

12 December 2020

Contributions of environmental signals and conserved residues to the functions of carbon storage regulator A of Borrelia burgdorferi

1 reference

12 December 2020

Eubacterial SpoVG homologs constitute a new family of site-specific DNA-binding proteins.

1 reference

12 December 2020

An inverted repeat in the ospC operator is required for induction in Borrelia burgdorferi

1 reference

12 December 2020

Bpur, the Lyme disease spirochete's PUR domain protein: identification as a transcriptional modulator and characterization of nucleic acid interactions

1 reference

12 December 2020

CsrA (BB0184) is not involved in activation of the RpoN-RpoS regulatory pathway in Borrelia burgdorferi

1 reference

12 December 2020

Trimmomatic: a flexible trimmer for Illumina sequence data

1 reference

12 December 2020

Comparative RNA-Seq based dissection of the regulatory networks and environmental stimuli underlying Vibrio parahaemolyticus gene expression during infection

1 reference

12 December 2020

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

12 December 2020

Simultaneous generation of many RNA-seq libraries in a single reaction

1 reference

12 December 2020

Molecular dissection of a Borrelia burgdorferi in vivo essential purine transport system

1 reference

12 December 2020

Regulation of bacterial virulence by Csr (Rsm) systems

1 reference

12 December 2020

Absence of sodA Increases the Levels of Oxidation of Key Metabolic Determinants of Borrelia burgdorferi

1 reference

12 December 2020

BadR (BB0693) controls growth phase-dependent induction of rpoS and bosR in Borrelia burgdorferi via recognizing TAAAATAT motifs

1 reference

12 December 2020

The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation

1 reference

12 December 2020

Borrelia burgdorferi BBK32 Inhibits the Classical Pathway by Blocking Activation of the C1 Complement Complex

1 reference

12 December 2020

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences

1 reference

12 December 2020

SpoVG Is a Conserved RNA-Binding Protein That Regulates Listeria monocytogenes Lysozyme Resistance, Virulence, and Swarming Motility.

1 reference

12 December 2020

The Csr system regulates genome-wide mRNA stability and transcription and thus gene expression in Escherichia coli.

1 reference

12 December 2020

Global Tn-seq analysis of carbohydrate utilization and vertebrate infectivity of Borrelia burgdorferi

1 reference

12 December 2020

Two Different Virulence-Related Regulatory Pathways in Borrelia burgdorferi Are Directly Affected by Osmotic Fluxes in the Blood Meal of Feeding Ixodes Ticks

1 reference

12 December 2020

Microarray-Based Comparative Genomic and Transcriptome Analysis of Borrelia burgdorferi

1 reference

12 December 2020

RNA-Seq of Borrelia burgdorferi in Multiple Phases of Growth Reveals Insights into the Dynamics of Gene Expression, Transcriptome Architecture, and Noncoding RNAs

1 reference

12 December 2020

In vivo expression technology and 5' end mapping of the Borrelia burgdorferi transcriptome identify novel RNAs expressed during mammalian infection.

1 reference

12 December 2020

Spermine and Spermidine Alter Gene Expression and Antigenic Profile of Borrelia burgdorferi.

1 reference

12 December 2020

Temperature-dependent sRNA transcriptome of the Lyme disease spirochete

1 reference

12 December 2020

Salmon provides fast and bias-aware quantification of transcript expression

1 reference

12 December 2020

Two Distinct Mechanisms Govern RpoS-Mediated Repression of Tick-Phase Genes during Mammalian Host Adaptation by Borrelia burgdorferi, the Lyme Disease Spirochete

1 reference

12 December 2020

Weak Organic Acids Decrease Borrelia burgdorferi Cytoplasmic pH, Eliciting an Acid Stress Response and Impacting RpoN- and RpoS-Dependent Gene Expression

1 reference

12 December 2020

Borrelia burgdorferi genes, bb0639-0642, encode a putative putrescine/spermidine transport system, PotABCD, that is spermidine specific and essential for cell survival

1 reference

12 December 2020

Borrelia burgdorferi SpoVG DNA- and RNA-Binding Protein Modulates the Physiology of the Lyme Disease Spirochete

1 reference

12 December 2020

The Stringent Response-Regulated sRNA Transcriptome of Borrelia burgdorferi.

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0203286

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30161198%20AND%20SRC:MED&resulttype=core&format=json

20 April 2020

1 reference