(Q73493450)

English

Conformational dynamics in mixed alpha/beta-oligonucleotides containing polarity reversals: a molecular dynamics study using time-averaged restraints

scientific article published on 01 December 2000

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scholarly article

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11200523%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

Conformational dynamics in mixed alpha/beta-oligonucleotides containing polarity reversals: a molecular dynamics study using time-averaged restraints (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11200523%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

author name string

J M Aramini

1

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4 November 2019

A Mujeeb

2

1 reference

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4 November 2019

N B Ulyanov

3

1 reference

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4 November 2019

M W Germann

4

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4 November 2019

publication date

1 December 2000

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4 November 2019

Journal of Biomolecular NMR

1 reference

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4 November 2019

18

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4 November 2019

4

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4 November 2019

287-302

1 reference

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4 November 2019

https://scigraph.springernature.com/pub.10.1023/a:1026798010342

0 references

Comparative activity of alpha- and beta-anomeric oligonucleotides on rabbit beta globin synthesis: inhibitory effect of cap targeted alpha-oligonucleotides.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Small structural ensembles for a 17-nucleotide mimic of the tRNA T psi C-loop via fitting dipolar relaxation rates with the quadratic programming algorithm.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Protein solution structure determination using distances from two-dimensional nuclear Overhauser effect experiments: effect of approximations on the accuracy of derived structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Statistical analysis of DNA duplex structural features

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Probability assessment of conformational ensembles: sugar repuckering in a DNA duplex in solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Sequence-dependent anisotropic flexibility of B-DNA. A conformational study

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Molecular dynamics with weighted time-averaged restraints for a DNA octamer. Dynamic interpretation of nuclear magnetic resonance data

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Studies of the HER-2/neu proto-oncogene in human breast and ovarian cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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New insights into the resistance of alpha-oligonucleotides to nucleases

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neu oncogene

1 reference

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Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra

1 reference

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12 December 2020

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Inhibition of Murine Leukemia Viruses by Nuclease-Resistant α-Oligonucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

based on heuristic

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Structure of a stereoregular phosphorothioate DNA/RNA duplex

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Structure refinement with molecular dynamics and a Boltzmann-weighted ensemble.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Time-averaged nuclear Overhauser effect distance restraints applied to tendamistat

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Interproton distance bounds from 2D NOE intensities: effect of experimental noise and peak integration errors.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

based on heuristic

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Biologic activity of oligonucleotides with polarity and anomeric center reversal

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Determination of the populations and structures of multiple conformers in an ensemble from NMR data: multiple-copy refinement of nucleic acid structures using floating weights

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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On using time-averaging restraints in molecular dynamics simulation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Dynamic modelling of a helical peptide in solution using NMR data: multiple conformations and multi-spin effects

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

based on heuristic

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Groove width and depth of B-DNA structures depend on local variation in slide

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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The dynamic NMR structure of the T psi C-loop: implications for the specificity of tRNA methylation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Dynamical studies of peptide motifs in the Plasmodium falciparum circumsporozoite surface protein by restrained and unrestrained MD simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

based on heuristic

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Conformational Variability of Solution Nucelar Magnetic Resonance Structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

based on heuristic

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B-DNA twisting correlates with base-pair morphology.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

based on heuristic

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Structure calculation of biological macromolecules from NMR data.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and dynamics of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety: NMR and molecular dynamics with conventional and time-averaged restraints

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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How to generate accurate solution structures of double-helical nucleic acid fragments using nuclear magnetic resonance and restrained molecular dynamics.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

based on heuristic

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Furanose sugar conformations in DNA from NMR coupling constants

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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NMR solution structures of [d(GCGAAT-3'-3'-alphaT-5'-5'-CGC)2] and its unmodified control

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Structure of a DNA:RNA hybrid duplex. Why RNase H does not cleave pure RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Are time-averaged restraints necessary for nuclear magnetic resonance refinement? A model study for DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d(CGCGAATTCGCG) double helix: "curves", dials and windows.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Structure of a DNA duplex that contains alpha-anomeric nucleotides and 3'-3' and 5'-5' phosphodiester linkages: coexistence of parallel and antiparallel DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Chimeric alpha-beta oligonucleotides as antisense inhibitors of reverse transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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NMR structure of the chimeric hybrid duplex r(gcaguggc).r(gcca)d(CTGC) comprising the tRNA-DNA junction formed during initiation of HIV-1 reverse transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

12 December 2020

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Solution structure of a DNA.RNA hybrid containing an alpha-anomeric thymidine and polarity reversals: d(ATGG-3'-3'-alphaT-5'-5'-GCTC). r(gagcaccau)

1 reference

https://pubmed.ncbi.nlm.nih.gov/11200523

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