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Structural details of urea binding to barnase: a molecular dynamics analysis
scientific article published on 01 May 1999
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Europe PubMed Central
PubMed publication ID
10378267
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10378267%20AND%20SRC:MED&resulttype=core&format=json
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9 December 2019
title
Structural details of urea binding to barnase: a molecular dynamics analysis
(English)
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Europe PubMed Central
PubMed publication ID
10378267
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10378267%20AND%20SRC:MED&resulttype=core&format=json
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9 December 2019
author
Martin Karplus
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M Karplus
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Europe PubMed Central
PubMed publication ID
10378267
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9 December 2019
author name string
A Caflisch
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1
1 reference
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Europe PubMed Central
PubMed publication ID
10378267
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9 December 2019
publication date
1 May 1999
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Europe PubMed Central
PubMed publication ID
10378267
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9 December 2019
published in
Structure
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PubMed publication ID
10378267
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9 December 2019
volume
7
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Europe PubMed Central
PubMed publication ID
10378267
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10378267%20AND%20SRC:MED&resulttype=core&format=json
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9 December 2019
issue
5
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Europe PubMed Central
PubMed publication ID
10378267
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10378267%20AND%20SRC:MED&resulttype=core&format=json
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9 December 2019
page(s)
477-488
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Europe PubMed Central
PubMed publication ID
10378267
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9 December 2019
cites work
Determination and analysis of urea and guanidine hydrochloride denaturation curves
1 reference
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Crossref
reference URL
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retrieved
7 January 2021
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Selective binding and solvent denaturation
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
based on heuristic
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Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
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THE EFFECT OF COMPOUNDS OF THE UREA-GUANIDINIUM CLASS ON THE ACTIVITY COEFFICIENT OF ACETYLTETRAGLYCINE ETHYL ESTER AND RELATED COMPOUNDS
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
retrieved
7 January 2021
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Protein interactions with urea and guanidinium chloride. A calorimetric study
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
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Peptide-urea interactions as observed in diketopiperazine-urea cocrystal
1 reference
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7 January 2021
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A structural basis for the interaction of urea with lysozyme
1 reference
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Crossref
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7 January 2021
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Molecular structure of a new family of ribonucleases
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Crossref
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7 January 2021
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Crystal structure of a barnase-d(GpC) complex at 1.9 A resolution
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
retrieved
7 January 2021
based on heuristic
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Determination of the three-dimensional solution structure of barnase using nuclear magnetic resonance spectroscopy
1 reference
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7 January 2021
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The sixth Datta Lecture. Protein folding and stability: the pathway of folding of barnase
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7 January 2021
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Jubilee Lecture. Pathway and stability of protein folding.
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https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
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Acid and thermal denaturation of barnase investigated by molecular dynamics simulations
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Molecular dynamics simulations of the unfolding of barnase in water and 8 M aqueous urea
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
Extrapolation to water of kinetic and equilibrium data for the unfolding of barnase in urea solutions
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
Protein stability as a function of denaturant concentration: the thermal stability of barnase in the presence of urea.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
based on heuristic
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The folding of an enzyme. III. Structure of the transition state for unfolding of barnase analysed by a protein engineering procedure
1 reference
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7 January 2021
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Simulation of activation free energies in molecular systems
1 reference
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Crossref
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7 January 2021
based on heuristic
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Molecular dynamics simulation of protein denaturation: solvation of the hydrophobic cores and secondary structure of barnase
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
based on heuristic
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The folding of an enzyme. IV. Structure of an intermediate in the refolding of barnase analysed by a protein engineering procedure
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
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inferred from DOI database lookup
Surface tension measurements show that chaotropic salting-in denaturants are not just water-structure breakers
1 reference
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https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
The alternative conformations of amyloidogenic proteins and their multi-step assembly pathways
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
Prion diseases and the BSE crisis
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
All-atom empirical potential for molecular modeling and dynamics studies of proteins
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
Comparison of simple potential functions for simulating liquid water
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
pKA values of carboxyl groups in the native and denatured states of barnase: the pKA values of the denatured state are on average 0.4 units lower than those of model compounds
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
New approach to the study of transient protein conformations: the formation of a semiburied salt link in the folding pathway of barnase.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
Solvent effects on protein motion and protein effects on solvent motion. Dynamics of the active site region of lysozyme
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Urea effects on protein stability: hydrogen bonding and the hydrophobic effect
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980064-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0969-2126(99)80064-1
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10378267
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10378267%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 December 2019
PubMed publication ID
10378267
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10378267
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10378267%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 December 2019
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