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Folding and catalysis by the VS ribozyme
scientific article published on 01 September 2002
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PubMed publication ID
12458081
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458081%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 December 2019
title
Folding and catalysis by the VS ribozyme
(English)
1 reference
stated in
Europe PubMed Central
PubMed publication ID
12458081
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458081%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 December 2019
author name string
Daniel A Lafontaine
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed publication ID
12458081
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458081%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 December 2019
David G Norman
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed publication ID
12458081
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458081%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 December 2019
David M J Lilley
series ordinal
3
1 reference
stated in
Europe PubMed Central
PubMed publication ID
12458081
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458081%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 December 2019
publication date
1 September 2002
1 reference
stated in
Europe PubMed Central
PubMed publication ID
12458081
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458081%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 December 2019
published in
Biochimie
1 reference
stated in
Europe PubMed Central
PubMed publication ID
12458081
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458081%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 December 2019
volume
84
1 reference
stated in
Europe PubMed Central
PubMed publication ID
12458081
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458081%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 December 2019
issue
9
1 reference
stated in
Europe PubMed Central
PubMed publication ID
12458081
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458081%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 December 2019
page(s)
889-896
1 reference
stated in
Europe PubMed Central
PubMed publication ID
12458081
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458081%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 December 2019
cites work
The VS catalytic RNA replicates by reverse transcription as a satellite of a retroplasmid
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
RNA-mediated ligation of self-cleavage products of a Neurospora mitochondrial plasmid transcript
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An efficient ligation reaction promoted by a Varkud Satellite ribozyme with extended 5'- and 3'-termini
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Nucleotide sequence requirements for self-cleavage of Neurospora VS RNA.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from neurospora VS RNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The A730 loop is an important component of the active site of the VS ribozyme
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structures of helical junctions in nucleic acids
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The global structure of the VS ribozyme
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Crystal structure of the ribosome at 5.5 A resolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of the 30S ribosomal subunit
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A long-range pseudoknot is required for activity of the Neurospora VS ribozyme
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A pH controlled conformational switch in the cleavage site of the VS ribozyme substrate RNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
RNA bulges and the helical periodicity of double-stranded RNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Sequence effects on RNA bulge-induced helix bending and a conserved five-nucleotide bulge from the group I introns
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identification of phosphate groups involved in metal binding and tertiary interactions in the core of the Neurospora VS ribozyme
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Crystal structure of a hepatitis delta virus ribozyme
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Importance of specific nucleotides in the folding of the natural form of the hairpin ribozyme
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A base change in the catalytic core of the hairpin ribozyme perturbs function but not domain docking
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The structural basis of hammerhead ribozyme self-cleavage
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A secondary-structure model for the self-cleaving region of Neurospora VS RNA.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0300-9084%2802%2901406-2
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0300-9084(02)01406-2
1 reference
stated in
Europe PubMed Central
PubMed publication ID
12458081
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458081%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 December 2019
PubMed publication ID
12458081
1 reference
stated in
Europe PubMed Central
PubMed publication ID
12458081
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458081%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 December 2019
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