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Quantitative analysis of protein phosphorylation on a system-wide scale by mass spectrometry-based proteomics
scientific article published on 01 March 2010
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scholarly article
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Europe PubMed Central
PubMed publication ID
20946816
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946816%20AND%20SRC:MED&resulttype=core&format=json
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15 February 2020
title
Quantitative analysis of protein phosphorylation on a system-wide scale by mass spectrometry-based proteomics
(English)
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stated in
Europe PubMed Central
PubMed publication ID
20946816
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946816%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 February 2020
author
Bernd Bodenmiller
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1
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Bernd Bodenmiller
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Europe PubMed Central
PubMed publication ID
20946816
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946816%20AND%20SRC:MED&resulttype=core&format=json
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15 February 2020
author name string
Ruedi Aebersold
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2
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Europe PubMed Central
PubMed publication ID
20946816
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946816%20AND%20SRC:MED&resulttype=core&format=json
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15 February 2020
publication date
1 March 2010
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Europe PubMed Central
PubMed publication ID
20946816
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946816%20AND%20SRC:MED&resulttype=core&format=json
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15 February 2020
published in
Methods in Enzymology
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Europe PubMed Central
PubMed publication ID
20946816
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946816%20AND%20SRC:MED&resulttype=core&format=json
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15 February 2020
volume
470
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Europe PubMed Central
PubMed publication ID
20946816
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946816%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 February 2020
page(s)
317-334
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Europe PubMed Central
PubMed publication ID
20946816
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946816%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 February 2020
describes a project that uses
mass spectrometry
1 reference
based on heuristic
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cites work
Mass spectrometry in proteomics
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
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7 January 2021
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Mass spectrometry-based proteomics
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatography
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The effects of mass accuracy, data acquisition speed, and search algorithm choice on peptide identification rates in phosphoproteomics
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Large-scale characterization of HeLa cell nuclear phosphoproteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Reproducible isolation of distinct, overlapping segments of the phosphoproteome
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Quantitation of phosphopeptides using affinity chromatography and stable isotope labeling
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Signaling--2000 and beyond
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The protein kinases of budding yeast: six score and more
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Global and site-specific quantitative phosphoproteomics: principles and applications
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Probability-based protein identification by searching sequence databases using mass spectrometry data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Selective Isolation at the Femtomole Level of Phosphopeptides from Proteolytic Digests Using 2D-NanoLC-ESI-MS/MS and Titanium Oxide Precolumns
1 reference
stated in
Crossref
reference URL
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retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Global analysis of protein phosphorylation in yeast
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
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inferred from DOI database lookup
An integrated mass spectrometric and computational framework for the analysis of protein interaction networks.
1 reference
stated in
Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
SIMAC (sequential elution from IMAC), a phosphoproteomics strategy for the rapid separation of monophosphorylated from multiply phosphorylated peptides
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Enrichment and separation of mono- and multiply phosphorylated peptides using sequential elution from IMAC prior to mass spectrometric analysis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Sch9 is a major target of TORC1 in Saccharomyces cerevisiae
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A systematic approach to the analysis of protein phosphorylation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2810%2970013-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0076-6879(10)70013-6
1 reference
stated in
Europe PubMed Central
PubMed publication ID
20946816
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946816%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 February 2020
PubMed publication ID
20946816
1 reference
stated in
Europe PubMed Central
PubMed publication ID
20946816
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20946816%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 February 2020
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