(Q88916585)

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Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted Human Immunodeficiency Virus Type 1 Drug Resistance in a Large US Clinic Population

scientific article published on 01 January 2019

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29 March 2020

Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted Human Immunodeficiency Virus Type 1 Drug Resistance in a Large US Clinic Population (English)

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Europe PubMed Central

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29 March 2020

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Sergei L. Kosakovsky Pond

10

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Sergei L Kosakovsky Pond

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29 March 2020

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Soo-Yon Rhee

1

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29 March 2020

Dana Clutter

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29 March 2020

W Jeffrey Fessel

3

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29 March 2020

Daniel Klein

4

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29 March 2020

Sally Slome

5

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29 March 2020

Benjamin A Pinsky

6

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29 March 2020

Julia L Marcus

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29 March 2020

Leo Hurley

8

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29 March 2020

Michael J Silverberg

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29 March 2020

Robert W Shafer

11

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29 March 2020

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1 January 2019

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29 March 2020

Clinical Infectious Diseases

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29 March 2020

68

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29 March 2020

2

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29 March 2020

213-221

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29 March 2020

copyright license

Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International

26 May 2018

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April 2022 Public Data File from Crossref

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0 references

Antiretroviral drug resistance testing in adults infected with human immunodeficiency virus type 1: 2003 recommendations of an International AIDS Society-USA Panel

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

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Not so different after all: a comparison of methods for detecting amino acid sites under selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Should resistance testing be performed for treatment-naive HIV-infected patients? A cost-effectiveness analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BEAST: Bayesian evolutionary analysis by sampling trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prevalence of transmitted drug resistance associated mutations and HIV-1 subtypes in new HIV-1 diagnoses, U.S.-2006.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transmitted antiretroviral drug resistance in individuals with newly diagnosed HIV infection: South Carolina 2005-2009.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential persistence of transmitted HIV-1 drug resistance mutation classes

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transmitted drug resistance in the CFAR network of integrated clinical systems cohort: prevalence and effects on pre-therapy CD4 and viral load

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transmitted Drug-Resistant HIV Type 1 Remains Prevalent and Impacts Virologic Outcomes Despite Genotype-Guided Antiretroviral Therapy

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic diversity as a marker for timing infection in HIV-infected patients: evaluation of a 6-month window and comparison with BED.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluation of sequence ambiguities of the HIV-1 pol gene as a method to identify recent HIV-1 infection in transmitted drug resistance surveys

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

96-Week resistance analyses of rilpivirine in treatment-naive, HIV-1-infected adults from the ECHO and THRIVE Phase III trials

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Persistence of HIV-1 transmitted drug resistance mutations

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Treatment-naive individuals are the major source of transmitted HIV-1 drug resistance in men who have sex with men in the Swiss HIV Cohort Study

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated analysis of phylogenetic clusters

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A multicenter study of initiation of antiretroviral therapy and transmitted drug resistance in antiretroviral-naive adolescents and young adults with HIV in New York City

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

E138A in HIV-1 reverse transcriptase is more common in subtype C than B: implications for rilpivirine use in resource-limited settings

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Persistence of frequently transmitted drug-resistant HIV-1 variants can be explained by high viral replication capacity.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prevalence of Transmitted HIV Drug Resistance Among Recently Infected Persons in San Diego, CA 1996-2013.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transmitted HIV Drug Resistance Is High and Longstanding in Metropolitan Washington, DC

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Commonly Transmitted HIV-1 Drug Resistance Mutations in Reverse-Transcriptase and Protease in Antiretroviral Treatment-Naive Patients and Response to Regimens Containing Tenofovir Disoproxil Fumarate or Tenofovir Alafenamide

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Longitudinal trends of HIV drug resistance in a large Canadian cohort, 1996-2016.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Collaborative update of a rule-based expert system for HIV-1 genotypic resistance test interpretation

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

No Substantial Evidence for Sexual Transmission of Minority HIV Drug Resistance Mutations in Men Who Have Sex with Men.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prevalence and trends in transmitted and acquired antiretroviral drug resistance, Washington, DC, 1999-2014.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV-1 drug resistance before initiation or re-initiation of first-line antiretroviral therapy in low-income and middle-income countries: a systematic review and meta-regression analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29846534

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1093/CID/CIY453

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29846534%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29846534%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29846534%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

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