(Q90950243)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

title

Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

single cell transcriptomics

18 April 2020

main subject

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

Christine Kocks

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

Anastasiya Boltengagen

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

Samantha D Praktiknjo

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

Jens Bernhard Bosse

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

Nikolaus Rajewsky

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

Altuna Akalin

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

Markus Landthaler

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

10

Friedrich Grässer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

3

Jennifer Menegatti

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

Barbara Walch-Rückheim

7

object named as

Barbara Walch-Rückheim

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

author name string

Vedran Franke

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

publication date

25 October 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

external data available at URL

18 April 2020

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE123782

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

page(s)

4878

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

18 April 2020

cell culture

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

Drop-seq

1 reference

A curated database reveals trends in single-cell transcriptomics

Shutoff of Host Gene Expression in Influenza A Virus and Herpesviruses: Similar Mechanisms and Common Themes

7 February 2021

cites work

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Infection by Herpes Simplex Virus 1 Causes Near-Complete Loss of RNA Polymerase II Occupancy on the Host Cell Genome

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

The many roles of the highly interactive HSV protein ICP27, a key regulator of infection

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Herpes simplex virus immediate-early proteins ICP0 and ICP4 activate the endogenous human alpha-globin gene in nonerythroid cells

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Initial Contact: The First Steps in Herpesvirus Entry.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Innate Immune Mechanisms and Herpes Simplex Virus Infection and Disease

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Evasion of Cytosolic DNA-Stimulated Innate Immune Responses by HSV-1.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Evasion of host antiviral innate immunity by HSV-1, an update

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Single-cell analysis identifies cellular markers of the HIV permissive cell

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Extreme heterogeneity of influenza virus infection in single cells.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Defining the Transcriptional Landscape during Cytomegalovirus Latency with Single-Cell RNA Sequencing.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Single-cell transcriptional dynamics of flavivirus infection.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Single-Cell RNA-Seq Reveals Transcriptional Heterogeneity in Latent and Reactivated HIV-Infected Cells.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Dissection of Influenza Infection In Vivo by Single-Cell RNA Sequencing

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

The use of single-cell RNA-Seq to understand virus-host interactions.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

HSV-1 single-cell analysis reveals the activation of anti-viral and developmental programs in distinct sub-populations.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Cell fixation and preservation for droplet-based single-cell transcriptomics

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Transcription of the herpes simplex virus 1 genome during productive and quiescent infection of neuronal and nonneuronal cells

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

destiny: diffusion maps for large-scale single-cell data in R.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Diffusion pseudotime robustly reconstructs lineage branching

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Herpes simplex virus induces the marked up-regulation of the zinc finger transcriptional factor INSM1, which modulates the expression and localization of the immediate early protein ICP0.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

A Herpesviral Immediate Early Protein Promotes Transcription Elongation of Viral Transcripts.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Tumour-necrosis factor-α induces heparan sulfate 6-O-endosulfatase 1 (Sulf-1) expression in fibroblasts.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Hydrogen Sulfide Delays LPS-Induced Preterm Birth in Mice via Anti-Inflammatory Pathways

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

The roles of NRF2 in modulating cellular iron homeostasis.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Nrf2: not "lost in translation".

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

p62/SQSTM1 is a target gene for transcription factor NRF2 and creates a positive feedback loop by inducing antioxidant response element-driven gene transcription

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

RNA velocity of single cells

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Herpes simplex virus type 1 infection imposes a G(1)/S block in asynchronously growing cells and prevents G(1) entry in quiescent cells

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Canonical and non-canonical mechanisms of Nrf2 activation

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Bardoxolone-the Phoenix?

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Activation of the antioxidant response element in primary cortical neuronal cultures derived from transgenic reporter mice

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Identification of a novel Nrf2-regulated antioxidant response element (ARE) in the mouse NAD(P)H:quinone oxidoreductase 1 gene: reassessment of the ARE consensus sequence

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Copper diethyldithiocarbamate as an activator of Nrf2 in cultured vascular endothelial cells

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Generation of a stable antioxidant response element-driven reporter gene cell line and its use to show redox-dependent activation of nrf2 by cancer chemotherapeutic agents.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Cytosolic herpes simplex virus capsids not only require binding inner tegument protein pUL36 but also pUL37 for active transport prior to secondary envelopment

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Herpesvirus lytic replication and the cell cycle: arresting new developments

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Chk2 is required for HSV-1 ICP0-mediated G2/M arrest and enhancement of virus growth

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

The products of the herpes simplex virus type 1 immediate-early US1/US1.5 genes downregulate levels of S-phase-specific cyclins and facilitate virus replication in S-phase Vero cells

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Identification of herpesvirus proteins that contribute to G1/S arrest

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

The ERK-1 function is required for HSV-1-mediated G1/S progression in HEP-2 cells and contributes to virus growth

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Dynamic Proteomics of Herpes Simplex Virus Infection.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

DUX4 activates germline genes, retroelements, and immune mediators: implications for facioscapulohumeral dystrophy.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Centrosomal protein TRIM43 restricts herpesvirus infection by regulating nuclear lamina integrity

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

A comparison of single-cell trajectory inference methods

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Integrating single-cell transcriptomic data across different conditions, technologies, and species

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

The role of Nrf2 transcription factor in viral infection

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

RA-839, a selective agonist of Nrf2/ARE pathway, exerts potent anti-rotaviral efficacy in vitro

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Interleukin-17D and Nrf2 mediate initial innate immune cell recruitment and restrict MCMV infection

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Nrf2 negatively regulates STING indicating a link between antiviral sensing and metabolic reprogramming

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Kaposi's sarcoma-associated herpesvirus induces Nrf2 during de novo infection of endothelial cells to create a microenvironment conducive to infection

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Bardoxolone Methyl Improves Kidney Function in Patients with Chronic Kidney Disease Stage 4 and Type 2 Diabetes: Post-Hoc Analyses from Bardoxolone Methyl Evaluation in Patients with Chronic Kidney Disease and Type 2 Diabetes Study.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

QuasR: quantification and annotation of short reads in R.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

PiGx: Reproducible genomics analysis pipelines with GNU Guix

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

STAR: ultrafast universal RNA-seq aligner

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Complex heatmaps reveal patterns and correlations in multidimensional genomic data.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Dimensionality reduction for visualizing single-cell data using UMAP

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

SCANPY: large-scale single-cell gene expression data analysis.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

Tandem affinity purification combined with inducible shRNA expression as a tool to study the maturation of macromolecular assemblies

1 reference

https://api.crossref.org/works/10.1038%2FS41467-019-12894-Z

7 January 2021

10.1038/S41467-019-12894-Z

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31653857%20AND%20SRC:MED&resulttype=core&format=json

18 April 2020

PubMed publication ID

31653857

1 reference