Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q92768161)
Watch
English
A comparison of single-cell trajectory inference methods
scientific article published on 01 April 2019
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
title
A comparison of single-cell trajectory inference methods
(English)
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
author
Wouter Saelens
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
Robrecht Cannoodt
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
Helena Todorov
series ordinal
3
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
Yvan Saeys
series ordinal
4
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
publication date
1 April 2019
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
published in
Nature Biotechnology
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
volume
37
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
issue
5
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
page(s)
547-554
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
cites work
Scaling single-cell genomics from phenomenology to mechanism
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Quantitative single-cell approaches to stem cell research
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Defining cell types and states with single-cell genomics
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Computational methods for trajectory inference from single-cell transcriptomics
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Reconstructing cell cycle pseudo time-series via single-cell transcriptome data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identification of cDC1- and cDC2-committed DC progenitors reveals early lineage priming at the common DC progenitor stage in the bone marrow.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Human haematopoietic stem cell lineage commitment is a continuous process
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Mapping the human DC lineage through the integration of high-dimensional techniques.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
SCENIC: single-cell regulatory network inference and clustering.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The Human Cell Atlas
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Mapping the Mouse Cell Atlas by Microwell-Seq.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
OMICtools: an informative directory for multi-omic data analysis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Diffusion pseudotime robustly reconstructs lineage branching
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Wishbone identifies bifurcating developmental trajectories from single-cell data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
SCOUP: a probabilistic model based on the Ornstein-Uhlenbeck process to analyze single-cell expression data during differentiation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Reversed graph embedding resolves complex single-cell trajectories.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
SCORPIUS improves trajectory inference and identifies novel modules in dendritic cell development
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Probabilistic modeling of bifurcations in single-cell gene expression data using a Bayesian mixture of factor analyzers.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
GeneNetWeaver: in silico benchmark generation and performance profiling of network inference methods
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Splatter: simulation of single-cell RNA sequencing data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Exponential scaling of single-cell RNA-seq in the past decade
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Joint profiling of chromatin accessibility and gene expression in thousands of single cells.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Shape constrained additive models
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Best practices for scientific computing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Top 10 metrics for life science software good practices
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A comprehensive evaluation of module detection methods for gene expression data.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
RNA velocity of single cells
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The self-assessment trap: can we all be better than average?
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Temporal dynamics and transcriptional control using single-cell gene expression analysis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Pseudotemporal Ordering of Single Cells Reveals Metabolic Control of Postnatal β Cell Proliferation.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The HIM glocal metric and kernel for network comparison and classification
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Reproducibility of computational workflows is automated using continuous analysis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41587-019-0071-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1038/S41587-019-0071-9
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
PubMed publication ID
30936559
1 reference
stated in
Europe PubMed Central
PubMed publication ID
30936559
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30936559%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 May 2020
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit