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Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.
scientific article published on 19 June 2018
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
title
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
main subject
transcriptome
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author
Davide Risso
series ordinal
2
1 reference
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Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
Diya Das
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4
1 reference
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Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
Sandrine Dudoit
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8
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Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
John Ngai
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5
object named as
John Ngai
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Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
author name string
Kelly Street
series ordinal
1
1 reference
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Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
Russell B Fletcher
series ordinal
3
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stated in
Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
Nir Yosef
series ordinal
6
1 reference
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Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
Elizabeth Purdom
series ordinal
7
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Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
language of work or name
English
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publication date
19 June 2018
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Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
published in
BMC Genomics
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Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
volume
19
1 reference
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Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
issue
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
page(s)
477
1 reference
stated in
Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
exact match
https://scigraph.springernature.com/pub.10.1186/s12864-018-4772-0
0 references
cites work
Splatter: simulation of single-cell RNA sequencing data
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PubMed Central
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3 July 2018
Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference.
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Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution
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3 July 2018
Probabilistic modeling of bifurcations in single-cell gene expression data using a Bayesian mixture of factor analyzers.
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Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria
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3 July 2018
Single-cell mRNA quantification and differential analysis with Census
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Order Under Uncertainty: Robust Differential Expression Analysis Using Probabilistic Models for Pseudotime Inference
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Revealing the vectors of cellular identity with single-cell genomics
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3 July 2018
mclust 5: Clustering, Classification and Density Estimation Using Gaussian Finite Mixture Models
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3 July 2018
Pseudotime estimation: deconfounding single cell time series
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3 July 2018
TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis
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Wishbone identifies bifurcating developmental trajectories from single-cell data
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3 July 2018
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Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis
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3 July 2018
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3 July 2018
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Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development
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Deciphering Cell Lineage Specification during Male Sex Determination with Single-Cell RNA Sequencing.
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Identifiers
DOI
10.1186/S12864-018-4772-0
1 reference
stated in
Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
Dimensions Publication ID
1104906426
1 reference
stated in
SciGraph
retrieved
9 September 2019
reference URL
https://scigraph.springernature.com/pub.10.1186/s12864-018-4772-0
PMC publication ID
6007078
1 reference
stated in
Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
PubMed publication ID
29914354
1 reference
stated in
Europe PubMed Central
PMC publication ID
6007078
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29914354%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 March 2020
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