(Q91648311)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

title

Genome assembly provides insights into the genome evolution and flowering regulation of orchardgrass (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Zhongren Zhang

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Jianping Wang

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Xinquan Zhang

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

author name string

Guangyan Feng

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Haidong Yan

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Bradley Shaun Bushman

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Aureliano Bombarely

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Mingzhou Li

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Zhongfu Yang

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Gang Nie

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Wengang Xie

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Lei Xu

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Peilin Chen

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Xinxin Zhao

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Wenkai Jiang

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

publication date

30 July 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

Plant Biotechnology Journal

23 April 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

volume

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

page(s)

373-388

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

23 April 2020

WGCNA

object named as

WGCNA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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23 February 2021

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The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

23 February 2021

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23 February 2021

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23 February 2021

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23 February 2021

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23 February 2021

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Construction of high-density genetic linkage map and identification of flowering-time QTLs in orchardgrass using SSRs and SLAF-seq

23 February 2021

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Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana

23 February 2021

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23 February 2021

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Genome engineering and plant breeding: impact on trait discovery and development

23 February 2021

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Coming of age: ten years of next-generation sequencing technologies

23 February 2021

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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

23 February 2021

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23 February 2021

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Genetic Diversity and Association of EST-SSR and SCoT Markers with Rust Traits in Orchardgrass (Dactylis glomerata L.).

23 February 2021

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A synteny-based draft genome sequence of the forage grass Lolium perenne

23 February 2021

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Genomics of crop wild relatives: expanding the gene pool for crop improvement

23 February 2021

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23 February 2021

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23 February 2021

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Evaluating the use of plant hormones and biostimulators in forage pastures to enhance shoot dry biomass production by perennial ryegrass (Lolium perenne L.).

23 February 2021

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Identifying differentially expressed genes under heat stress and developing molecular markers in orchardgrass (Dactylis glomerata L.) through transcriptome analysis

23 February 2021

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Phylogenomics reveals surprising sets of essential and dispensable clades of MIKC(c)-group MADS-box genes in flowering plants

23 February 2021

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Flowering time regulation in crops—what did we learn from Arabidopsis?

23 February 2021

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23 February 2021

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23 February 2021

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23 February 2021

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23 February 2021

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23 February 2021

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23 February 2021

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23 February 2021

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23 February 2021

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Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression

23 February 2021

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23 February 2021

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Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice

23 February 2021

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The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK.

23 February 2021

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The advantages of SMRT sequencing

23 February 2021

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Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3.

23 February 2021

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

23 February 2021

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

23 February 2021

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Retrospective view of North American potato (Solanum tuberosum L.) breeding in the 20th and 21st centuries

23 February 2021

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Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol

23 February 2021

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The inhibitory effect of ABA on floral transition is mediated by ABI5 in Arabidopsis.

23 February 2021

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Wheat TILLING mutants show that the vernalization gene VRN1 down-regulates the flowering repressor VRN2 in leaves but is not essential for flowering

23 February 2021

1 reference

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How important are transposons for plant evolution?

23 February 2021

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The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

23 February 2021

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23 February 2021

1 reference

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Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

23 February 2021

1 reference

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Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2, and -3 are the dominant paralogs.

23 February 2021

1 reference

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23 February 2021

Plant ABC Transporters

1 reference

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Dynamic interactions between transposable elements and their hosts

23 February 2021

1 reference

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Orchardgrass (Dactylis glomerata L.) EST and SSR marker development, annotation, and transferability

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

The MYB96 transcription factor regulates cuticular wax biosynthesis under drought conditions in Arabidopsis

23 February 2021

1 reference

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Genome rearrangements in maize induced by alternative transposition of reversed ac/ds termini

23 February 2021

1 reference

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A novel hybrid gene prediction method employing protein multiple sequence alignments.

23 February 2021

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Differential expression analysis for sequence count data

23 February 2021

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Plant phenotypic plasticity in a changing climate.

23 February 2021

1 reference

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

23 February 2021

1 reference

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A hitchhiker's guide to the MADS world of plants

23 February 2021

1 reference

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A review of fatty acid profiles and antioxidant content in grass-fed and grain-fed beef

23 February 2021

1 reference

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Gene ontology analysis for RNA-seq: accounting for selection bias

23 February 2021

1 reference

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Molecular breeding in developing countries: challenges and perspectives

23 February 2021

1 reference

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

23 February 2021

1 reference

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

23 February 2021

1 reference

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Fast model-based estimation of ancestry in unrelated individuals

23 February 2021

1 reference

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Circos: an information aesthetic for comparative genomics

23 February 2021

1 reference

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Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Fast and accurate short read alignment with Burrows-Wheeler transform

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Using RepeatMasker to identify repetitive elements in genomic sequences

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

GASA5, a regulator of flowering time and stem growth in Arabidopsis thaliana

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

The Sorghum bicolor genome and the diversification of grasses

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

WGCNA: an R package for weighted correlation network analysis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Molecular plant breeding as the foundation for 21st century crop improvement

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

AGL61 interacts with AGL80 and is required for central cell development in Arabidopsis.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

TASSEL: software for association mapping of complex traits in diverse samples

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

A Potential Pathway for Galactose Metabolism in Cucumis sativus L., A Stachyose Transporting Species

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

De novo identification of repeat families in large genomes

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

The significance of responses of the genome to challenge

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Genome conflict in the gramineae

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Rapid recent growth and divergence of rice nuclear genomes

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

MUSCLE: multiple sequence alignment with high accuracy and high throughput

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Fast algorithms for large-scale genome alignment and comparison

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Arabidopsis, the Rosetta stone of flowering time?

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

InterProScan--an integration platform for the signature-recognition methods in InterPro

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Finding the genes in genomic DNA.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Phylogeny and substitution rates of angiosperm actin genes.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Nested retrotransposons in the intergenic regions of the maize genome

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

Basic local alignment search tool

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6953241

23 February 2021

Identifiers

DOI

10.1111/PBI.13205

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31276273%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

1 reference