Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q93170760)
Watch
English
AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential
scientific article published on 01 July 2019
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
title
AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential
(English)
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
main subject
natural product
1 reference
based on heuristic
inferred from title
web server
1 reference
based on heuristic
inferred from title
author
Katharina Steinke
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
author name string
Mohammad Alanjary
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
Nadine Ziemert
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
publication date
1 July 2019
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
published in
Nucleic Acids Research
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
volume
47
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
page(s)
W276-W282
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
issue
W1
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
copyright license
Creative Commons Attribution-NonCommercial 4.0 International
start time
18 April 2019
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
describes a project that uses
SQL
1 reference
stated in
Europe PubMed Central
retrieved
26 June 2022
reference URL
https://europepmc.org/article/PMC/PMC6602446
based on heuristic
inferred from PubMed Central ID database lookup
cites work
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
UFBoot2: Improving the Ultrafast Bootstrap Approximation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
ModelFinder: fast model selection for accurate phylogenetic estimates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Mash: fast genome and metagenome distance estimation using MinHash
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
A New Genomics-Driven Taxonomy of Bacteria and Archaea: Are We There Yet?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Phylogeny-aware identification and correction of taxonomically mislabeled sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
EDGAR 2.0: an enhanced software platform for comparative gene content analyses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
The Pfam protein families database: towards a more sustainable future
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Coalescence vs. concatenation: Sophisticated analyses vs. first principles applied to rooting the angiosperms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Multilocus sequence analysis (MLSA) in prokaryotic taxonomy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
The infallible microbial identification test: does it exist?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
The effects of partitioning on phylogenetic inference
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Ribosomal Database Project: data and tools for high throughput rRNA analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
RefSeq: an update on mammalian reference sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Genome sequence-based species delimitation with confidence intervals and improved distance functions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Molecular phylogenetics: principles and practice
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Using MCL to extract clusters from networks.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
HMMER web server: interactive sequence similarity searching
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
BIGSdb: Scalable analysis of bacterial genome variation at the population level.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Widespread homologous recombination within and between Streptomyces species
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Coalescent methods for estimating phylogenetic trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Does choice in model selection affect maximum likelihood analysis?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: use of multilocus sequence analysis for streptomycete systematics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
PAML 4: phylogenetic analysis by maximum likelihood
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Analysis of multiple differing copies of the 16S rRNA gene in five clinical isolates and three type strains of Nocardia species and implications for species assignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Genomic insights that advance the species definition for prokaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
CVTree: a phylogenetic tree reconstruction tool based on whole genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
The TIGRFAMs database of protein families
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
The neighbor-joining method: a new method for reconstructing phylogenetic trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Basic local alignment search tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602446
retrieved
11 February 2021
Identifiers
DOI
10.1093/NAR/GKZ282
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
PMCID
6602446
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
PubMed ID
30997504
1 reference
stated in
Europe PubMed Central
PMCID
6602446
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30997504%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 May 2020
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
