(Q39776537)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

title

Phylogeny-aware identification and correction of taxonomically mislabeled sequences (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Pelin Yilmaz

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Frank Oliver Glöckner

4

object named as

Frank Oliver Glöckner

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

author name string

Alexey M Kozlov

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

Alexandros Stamatakis

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

language of work or name

English

0 references

publication date

10 May 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

volume

44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

page(s)

5022-5033

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 4.0 International

4 April 2020

copyright license

start time

11 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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Policy, phylogeny, and the parasite

22 September 2017

1 reference

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The microbiome in inflammatory bowel disease: current status and the future ahead

22 September 2017

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Ribosomal Database Project: data and tools for high throughput rRNA analysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

LPSN--list of prokaryotic names with standing in nomenclature

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Towards a unified paradigm for sequence-based identification of fungi

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Genomic variation landscape of the human gut microbiome

22 September 2017

1 reference

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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

22 September 2017

1 reference

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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Type 1 diabetes: role of intestinal microbiome in humans and mice

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

UCHIME improves sensitivity and speed of chimera detection

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Search and clustering orders of magnitude faster than BLAST

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

QIIME allows analysis of high-throughput community sequencing data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

ETE: a python Environment for Tree Exploration

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

INDELible: a flexible simulator of biological sequence evolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota).

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

ARB: a software environment for sequence data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Estimating prokaryotic diversity and its limits

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

A molecular view of microbial diversity and the biosphere

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Hybrid DNA artifact from PCR of closely related target sequences.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Deletion mutagenesis during polymerase chain reaction: dependence on DNA polymerase

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

The UNITE database for molecular identification of fungi--recent updates and future perspectives

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Inferring confidence sets of possibly misspecified gene trees.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914121

Populations of a cyprinid fish are self-sustaining despite widespread feminization of males

20 August 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW396

Detection of gene pathways with predictive power for breast cancer prognosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW396

Prezygotic reproductive isolation between Saccharomyces cerevisiae and Saccharomyces paradoxus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW396

Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW396

Improving ITS sequence data for identification of plant pathogenic fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW396

21 January 2018

Identifiers

DOI

10.1093/NAR/GKW396

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27166378%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

PubMed publication ID

27166378

1 reference