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Identification of the viral RNA promoter stem loop A (SLA)-binding site on Zika virus polymerase NS5
scientific article published on 06 August 2020
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scholarly article
1 reference
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Europe PubMed Central
PubMed ID
32764551
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32764551%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 August 2020
title
Identification of the viral RNA promoter stem loop A (SLA)-binding site on Zika virus polymerase NS5
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
32764551
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32764551%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 August 2020
main subject
Zika virus
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author name string
Paul J Bujalowski
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed ID
32764551
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32764551%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 August 2020
Wlodzimierz Bujalowski
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed ID
32764551
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32764551%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 August 2020
Kyung H Choi
series ordinal
3
1 reference
stated in
Europe PubMed Central
PubMed ID
32764551
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32764551%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 August 2020
publication date
6 August 2020
1 reference
stated in
Europe PubMed Central
PubMed ID
32764551
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32764551%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 August 2020
published in
Scientific Reports
1 reference
stated in
Europe PubMed Central
PubMed ID
32764551
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32764551%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 August 2020
volume
10
1 reference
stated in
Europe PubMed Central
PubMed ID
32764551
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32764551%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 August 2020
issue
1
1 reference
stated in
Europe PubMed Central
PubMed ID
32764551
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32764551%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 August 2020
page(s)
13306
1 reference
stated in
Europe PubMed Central
PubMed ID
32764551
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32764551%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 August 2020
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A 5' RNA element promotes dengue virus RNA synthesis on a circular genome
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Functional RNA elements in the dengue virus genome
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Expression, purification, and characterization of the RNA 5'-triphosphatase activity of dengue virus type 2 nonstructural protein 3.
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A comparison of viral RNA-dependent RNA polymerases
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RNA-dependent RNA polymerases from Flaviviridae
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Dengue Virus Nonstructural Protein 5 (NS5) Assembles into a Dimer with a Unique Methyltransferase and Polymerase Interface
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Crystal Structure of the full-length Japanese encephalitis virus NS5 reveals a conserved methyltransferase-polymerase interface
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A crystal structure of the Dengue virus NS5 protein reveals a novel inter-domain interface essential for protein flexibility and virus replication
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Structure and function of the Zika virus full-length NS5 protein
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7 January 2021
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Crystal structure of full-length Zika virus NS5 protein reveals a conformation similar to Japanese encephalitis virus NS5.
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Flaviviral Replication Complex: Coordination between RNA Synthesis and 5'-RNA Capping
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Nucleotide analogs and molecular modeling studies reveal key interactions involved in substrate recognition by the yeast RNA triphosphatase
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An RNA cap (nucleoside-2'-O-)-methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization
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RNA elements within the 5' untranslated region of the West Nile virus genome are critical for RNA synthesis and virus replication
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Terminal structures of West Nile virus genomic RNA and their interactions with viral NS5 protein
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7 January 2021
based on heuristic
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Sequence and secondary structure analysis of the 5'-terminal region of flavivirus genome RNA.
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7 January 2021
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Characterization of cis-acting RNA elements of Zika virus by using a self-splicing ribozyme-dependent infectious clone
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Distinct RNA Elements Confer Specificity to Flavivirus RNA Cap Methylation Events
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Interactions between the Dengue Virus Polymerase NS5 and Stem-Loop A.
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Full-length Dengue virus RNA-dependent RNA polymerase-RNA/DNA complexes: stoichiometries, intrinsic affinities, cooperativities, base, and conformational specificities.
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The F1 motif of dengue virus polymerase NS5 is involved in promoter-dependent RNA synthesis
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Paired charge-to-alanine mutagenesis of dengue virus type 4 NS5 generates mutants with temperature-sensitive, host range, and mouse attenuation phenotypes
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The C-terminal 50 amino acid residues of dengue NS3 protein are important for NS3-NS5 interaction and viral replication
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Structural and functional analysis of methylation and 5'-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5
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Analysis of RNA binding by the dengue virus NS5 RNA capping enzyme
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Crossref
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Crystal Structure of the Dengue Virus Methyltransferase Bound to a 5′-Capped Octameric RNA
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Kinetic mechanism of the single-stranded DNA recognition by Escherichia coli replicative helicase DnaB protein. Application of the matrix projection operator technique to analyze stopped-flow kinetics
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Kinetic mechanism of the ssDNA recognition by the polymerase X from African Swine Fever Virus. Dynamics and energetics of intermediate formations.
1 reference
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Crossref
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Dengue virus nonstructural protein 5 adopts multiple conformations in solution
1 reference
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Crossref
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inferred from DOI database lookup
Accurate secondary structure prediction and fold recognition for circular dichroism spectroscopy
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Mfold web server for nucleic acid folding and hybridization prediction
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7 January 2021
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inferred from DOI database lookup
Identifiers
DOI
10.1038/S41598-020-70094-Y
1 reference
stated in
Europe PubMed Central
PubMed ID
32764551
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32764551%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 August 2020
PMCID
7413259
0 references
PubMed ID
32764551
1 reference
stated in
Europe PubMed Central
PubMed ID
32764551
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32764551%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 August 2020
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