(Q101222106)

English

Substrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods

scientific article published on 04 November 2020

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Substrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

machine learning

0 references

Sanni Voutilainen

1

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

11

object named as

Juho Rousu

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

10

object named as

Samuel Kaski

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

author name string

Markus Heinonen

2

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Martina Andberg

3

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Emmi Jokinen

4

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Hannu Maaheimo

5

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Johan Pääkkönen

6

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Nina Hakulinen

7

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Juha Rouvinen

8

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Harri Lähdesmäki

9

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Merja Penttilä

12

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Anu Koivula

13

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

publication date

4 November 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Applied Microbiology and Biotechnology

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Phasercrystallographic software

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Towards automated crystallographic structure refinement with phenix.refine

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Probing the acetaldehyde-sensitivity of 2-deoxy-ribose-5-phosphate aldolase (DERA) leads to resistant variants.

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Reducing codon redundancy and screening effort of combinatorial protein libraries created by saturation mutagenesis.

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

The first crystal structure of archaeal aldolase. Unique tetrameric structure of 2-deoxy-d-ribose-5-phosphate aldolase from the hyperthermophilic archaea Aeropyrum pernix

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Enzymatic assembly of DNA molecules up to several hundred kilobases

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

MolProbity: all-atom structure validation for macromolecular crystallography

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Computational Enzyme Design: Advances, hurdles and possible ways forward

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Nucleophile Promiscuity of Natural and Engineered Aldolases.

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Polder maps: improving OMIT maps by excluding bulk solvent.

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Computational enzyme design: transitioning from catalytic proteins to enzymes

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

A highly productive, whole-cell DERA chemoenzymatic process for production of key lactonized side-chain intermediates in statin synthesis

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

2-Deoxy-D-ribose-5-phosphate aldolase (DERA): applications and modifications

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Conformational Sampling of the Intrinsically Disordered C-Terminal Tail of DERA Is Important for Enzyme Catalysis

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Analysis of the class I aldolase binding site architecture based on the crystal structure of 2-deoxyribose-5-phosphate aldolase at 0.99A resolution

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Computational enzyme design

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Features and development of Coot

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Directed evolution of an industrial biocatalyst: 2-deoxy-D-ribose 5-phosphate aldolase.

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

PHENIX: a comprehensive Python-based system for macromolecular structure solution

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Exploring the challenges of computational enzyme design by rebuilding the active site of a dehalogenase

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Mechanism-based inhibition of an aldolase at high concentrations of its natural substrate acetaldehyde: structural insights and protective strategies

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Observation of covalent intermediates in an enzyme mechanism at atomic resolution

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Klebsiella pneumoniae 1,3-propanediol:NAD+ oxidoreductase

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

2-Deoxyribose-5-phosphate aldolase, a remarkably tolerant aldolase towards nucleophile substrates

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

T7 vectors with modified T7lac promoter for expression of proteins in Escherichia coli

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Identifiers

10.1007/S00253-020-10960-X

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q101222106&oldid=1977067327"