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Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions
scientific article published on 18 April 2022
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scholarly article
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Crossref
retrieved
19 April 2022
title
Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions
(English)
1 reference
stated in
Crossref
retrieved
19 April 2022
main subject
WikiPathways
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MECP2
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author
Ryan Miller
object named as
Ryan A. Miller
series ordinal
1
1 reference
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Crossref
retrieved
19 April 2022
Martina Summer-Kutmon
object named as
Martina Kutmon
series ordinal
2
1 reference
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Crossref
retrieved
19 April 2022
Egon Willighagen
object named as
Egon L. Willighagen
series ordinal
6
1 reference
stated in
Crossref
retrieved
19 April 2022
Andra Waagmeester
series ordinal
4
0 references
Chris T. Evelo
series ordinal
5
0 references
Anwesha Bohler
series ordinal
3
0 references
language of work or name
English
1 reference
stated in
Crossref
retrieved
19 April 2022
publication date
18 April 2022
1 reference
stated in
Crossref
retrieved
19 April 2022
published in
PLOS One
1 reference
stated in
Crossref
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19 April 2022
volume
17
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Crossref
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19 April 2022
issue
4
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19 April 2022
page(s)
e0263057
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Crossref
retrieved
19 April 2022
copyright license
Creative Commons Attribution 4.0 International
start time
18 April 2022
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
Human protein-coding genes and gene feature statistics in 2019.
0 references
Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources
2 references
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/citations/10.1371/JOURNAL.PCBI.1004989
retrieved
29 June 2022
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
WikiPathways: capturing the full diversity of pathway knowledge
2 references
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/citations/10.1093/NAR/GKV1024
retrieved
29 June 2022
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research
2 references
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/citations/10.1093/NAR/GKX1064
retrieved
29 June 2022
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome
2 references
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/citations/10.3389/FGENE.2019.00059
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29 June 2022
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses
2 references
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/citations/10.1186/S12915-020-00940-Y
retrieved
29 June 2022
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
Integrated analysis of human transcriptome data for Rett syndrome finds a network of involved genes
1 reference
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
De novo sphingolipid biosynthesis: a necessary, but dangerous, pathway
1 reference
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
An overview of sphingolipid metabolism: from synthesis to breakdown
1 reference
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation
1 reference
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
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29 June 2022
A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method
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COCI
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https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
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29 June 2022
Sphingolipid metabolism diseases
1 reference
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset
1 reference
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
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29 June 2022
Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes
1 reference
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
The complexity of sphingolipid biosynthesis in the endoplasmic reticulum
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
A census of human soluble protein complexes
1 reference
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
Scientific competency questions as the basis for semantically enriched open pharmacological space development
1 reference
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
The Systems Biology Graphical Notation
1 reference
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COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
The Reactome pathway Knowledgebase
1 reference
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
HMDB 4.0: the human metabolome database for 2018.
1 reference
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
Rett syndrome and beyond: recurrent spontaneous and familial MECP2 mutations at CpG hotspots
1 reference
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
Neurodevelopmental disorders in males related to the gene causing Rett syndrome in females (MECP2)
1 reference
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
Shape expressions: an RDF validation and transformation language
1 reference
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA
1 reference
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
PathVisio 3: an extendable pathway analysis toolbox
1 reference
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
Specific mutations in methyl-CpG-binding protein 2 confer different severity in Rett syndrome.
1 reference
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
Reactome from a WikiPathways Perspective
1 reference
stated in
COCI
reference URL
https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PONE.0263057
retrieved
29 June 2022
Identifiers
DOI
10.1371/JOURNAL.PONE.0263057
1 reference
stated in
Crossref
retrieved
19 April 2022
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