(Q114371276)

1

0 references

Anastacia Wienecke

2

0 references

Michael L Knight

3

0 references

Daniel Desirò

4

0 references

Alain Laederach

5

0 references

Alexander Borodavka

Creative Commons Attribution 4.0 International

6

0 references

publication date

5 September 2022

0 references

published in

Nucleic Acids Research

0 references

volume

50

0 references

issue

17

0 references

page(s)

10078-10092

0 references

copyright license

start time

5 September 2022

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Bovine rotavirus strain RF

1 reference

based on heuristic

inferred from Methods description

cites work

Comprehensive in vivo secondary structure of the SARS-CoV-2 genome reveals novel regulatory motifs and mechanisms

1 reference

Architecture and secondary structure of an entire HIV-1 RNA genome

7 October 2022

1 reference

Efficient translation of rotavirus mRNA requires simultaneous interaction of NSP3 with the eukaryotic translation initiation factor eIF4G and the mRNA 3' end

7 October 2022

1 reference

Using SHAPE-MaP to model RNA secondary structure and identify 3'UTR variation in chikungunya virus

7 October 2022

1 reference

A Mathematical Theory of Communication

7 October 2022

1 reference

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

7 October 2022

1 reference

Rotavirus replication: plus-sense templates for double-stranded RNA synthesis are made in viroplasms

7 October 2022

1 reference

Genomic analysis of codon, sequence and structural conservation with selective biochemical-structure mapping reveals highly conserved and dynamic structures in rotavirus RNAs with potential cis-acting functions

7 October 2022

1 reference

Protein-mediated RNA folding governs sequence-specific interactions between rotavirus genome segments

7 October 2022

1 reference

Reverse genetics of rotavirus

7 October 2022

1 reference

Identification and characterization of the helix-destabilizing activity of rotavirus nonstructural protein NSP2.

7 October 2022

1 reference

Emerging themes in rotavirus cell entry, genome organization, transcription and replication

7 October 2022

1 reference

Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis

7 October 2022

1 reference

Further characterisation of rotavirus cores: Ss(+)RNAs can be packaged in vitro but packaging lacks sequence specificity

7 October 2022

1 reference

Allele-specific SHAPE-MaP assessment of the effects of somatic variation and protein binding on mRNA structure

7 October 2022

1 reference

Structural divergence creates new functional features in alphavirus genomes.

7 October 2022

1 reference

Experimental pathways towards developing a rotavirus reverse genetics system: synthetic full length rotavirus ssRNAs are neither infectious nor translated in permissive cells

7 October 2022

1 reference

Accurate SHAPE-directed RNA structure determination

7 October 2022

1 reference

SHAPE-directed RNA secondary structure prediction

7 October 2022

1 reference

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

7 October 2022

1 reference

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

7 October 2022

1 reference

Structural basis of rotavirus RNA chaperone displacement and RNA annealing

7 October 2022

1 reference

Mechanism of Reovirus Double-Stranded Ribonucleic Acid Synthesis In Vivo and In Vitro

7 October 2022

1 reference

Insights into RNA structure and function from genome-wide studies

7 October 2022

1 reference

Genome packaging in multi-segmented dsRNA viruses: distinct mechanisms with similar outcomes

7 October 2022

1 reference

RNAstructure: software for RNA secondary structure prediction and analysis

7 October 2022

1 reference

Role of RNA structure in regulating pre-mRNA splicing

7 October 2022

1 reference

Accurate detection of chemical modifications in RNA by mutational profiling (MaP) with ShapeMapper 2.

7 October 2022

1 reference

A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication.

7 October 2022

1 reference

7 October 2022

ViennaRNA Package 2.0

1 reference

Rotavirus protein NSP3 (NS34) is bound to the 3' end consensus sequence of viral mRNAs in infected cells

7 October 2022

1 reference

Taming free energy landscapes with RNA chaperones

7 October 2022

1 reference

Codon conservation in the influenza A virus genome defines RNA packaging signals

7 October 2022

1 reference

Translation enhancer in the 3'-untranslated region of rotavirus gene 6 mRNA promotes expression of the major capsid protein VP6.

7 October 2022

1 reference

VARNA: Interactive drawing and editing of the RNA secondary structure

7 October 2022

1 reference

Comparative Visualization of the RNA Suboptimal Conformational Ensemble In Vivo.

7 October 2022

1 reference

Functional long-range RNA-RNA interactions in positive-strand RNA viruses

7 October 2022

1 reference

RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP).

7 October 2022

1 reference

Assortment and packaging of the segmented rotavirus genome.

7 October 2022

1 reference

Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains

7 October 2022

1 reference

Selective flexible packaging pathways of the segmented genome of influenza A virus

7 October 2022

1 reference

3D based on 2D: Calculating helix angles and stacking patterns using , an RNA Python library centered on secondary structure elements

7 October 2022

1 reference

Characterization of rotavirus replication intermediates: a model for the assembly of single-shelled particles.

7 October 2022

1 reference

Stability of local secondary structure determines selectivity of viral RNA chaperones

7 October 2022

1 reference

Guidelines for SHAPE Reagent Choice and Detection Strategy for RNA Structure Probing Studies

7 October 2022

1 reference

In vivo analysis of influenza A mRNA secondary structures identifies critical regulatory motifs

7 October 2022

1 reference

Pervasive tertiary structure in the dengue virus RNA genome

7 October 2022

1 reference

In-cell RNA structure probing with SHAPE-MaP

7 October 2022

1 reference

The structure of the influenza A virus genome

7 October 2022

1 reference

Using Species a Rotavirus Reverse Genetics to Engineer Chimeric Viruses Expressing SARS-CoV-2 Spike Epitopes

7 October 2022

1 reference

To Knot or Not to Knot: Multiple Conformations of the SARS-CoV-2 Frameshifting RNA Element

7 October 2022

1 reference