(Q106872435)

1

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Han Wan

2

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Madison S. Strine

3

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Rafael de Cesaris Araujo Tavares

4

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Anna Marie Pyle

Strong epistatic selection on the RNA secondary structure of HIV

6

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publication date

February 2021

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published in

Molecular Cell

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volume

81

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issue

3

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page(s)

584-598.e5

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cites work

1 reference

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Programmed ribosomal frameshifting in decoding the SARS-CoV genome

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Visualization of RNA structure models within the Integrative Genomics Viewer.

17 May 2021

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Accurate detection of chemical modifications in RNA by mutational profiling (MaP) with ShapeMapper 2.

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Genomic variance of the 2019-nCoV coronavirus

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Group-specific structural features of the 5'-proximal sequences of coronavirus genomic RNAs

17 May 2021

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Dynamics of translation by single ribosomes through mRNA secondary structures

17 May 2021

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Regulation of programmed ribosomal frameshifting by co-translational refolding RNA hairpins.

17 May 2021

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Ribosome pausing, a dangerous necessity for co-translational events

17 May 2021

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SARS and MERS: recent insights into emerging coronaviruses

17 May 2021

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Pervasive tertiary structure in the dengue virus RNA genome

17 May 2021

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A Balancing Act: MDA5 in Antiviral Immunity and Autoinflammation

17 May 2021

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A statistical sampling algorithm for RNA secondary structure prediction

17 May 2021

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RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble

17 May 2021

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An interactive web-based dashboard to track COVID-19 in real time

17 May 2021

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Small molecules that target group II introns are potent antifungal agents

17 May 2021

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Role of RNA Structures in Genome Terminal Sequences of the Hepatitis C Virus for Replication and Assembly

17 May 2021

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Characterization of the RNA components of a putative molecular switch in the 3' untranslated region of the murine coronavirus genome

17 May 2021

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A hypervariable region within the 3' cis-acting element of the murine coronavirus genome is nonessential for RNA synthesis but affects pathogenesis

17 May 2021

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Sequencing and structure probing of long RNAs using MarathonRT: a next-generation reverse transcriptase

17 May 2021

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Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots

17 May 2021

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Targeting the SARS-CoV-2 RNA Genome with Small Molecule Binders and Ribonuclease Targeting Chimera (RIBOTAC) Degraders

17 May 2021

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Evidence for ligandable sites in structured RNA throughout the Protein Data Bank

17 May 2021

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Structural and functional conservation of the programmed -1 ribosomal frameshift signal of SARS coronavirus 2 (SARS-CoV-2)

17 May 2021

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The Architecture of SARS-CoV-2 Transcriptome

17 May 2021

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Touchdown PCR for increased specificity and sensitivity in PCR amplification

17 May 2021

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R-CHIE: a web server and R package for visualizing RNA secondary structures

17 May 2021

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Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor

17 May 2021

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Bridging the gap between in vitro and in vivo RNA folding

17 May 2021

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Integrative Analysis of Zika Virus Genome RNA Structure Reveals Critical Determinants of Viral Infectivity

17 May 2021

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OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics

17 May 2021

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Biological activity and biotechnological aspects of locked nucleic acids.

17 May 2021

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Structural and functional conservation of cis-acting RNA elements in coronavirus 5'-terminal genome regions.

17 May 2021

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Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements

17 May 2021

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Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization

17 May 2021

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Functionally conserved architecture of hepatitis C virus RNA genomes

17 May 2021

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Probing RNA structure in vivo

17 May 2021

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FUBAR: a fast, unconstrained bayesian approximation for inferring selection

17 May 2021

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Functions and regulation of RNA editing by ADAR deaminases

17 May 2021

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Conformational inhibition of the hepatitis C virus internal ribosome entry site RNA

17 May 2021

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https://api.crossref.org/works/10.1016/J.MOLCEL.2020.12.041

The Coding Region of the HCV Genome Contains a Network of Regulatory RNA Structures

17 May 2021

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The role of programmed-1 ribosomal frameshifting in coronavirus propagation

17 May 2021

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A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal

17 May 2021

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Altering SARS coronavirus frameshift efficiency affects genomic and subgenomic RNA production

17 May 2021

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RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses: a first look

17 May 2021

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MACSE v2: Toolkit for the Alignment of Coding Sequences Accounting for Frameshifts and Stop Codons

17 May 2021

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In-line probing analysis of riboswitches

17 May 2021

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RNAstructure: software for RNA secondary structure prediction and analysis

17 May 2021

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A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs

17 May 2021

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The structure of a rigorously conserved RNA element within the SARS virus genome

17 May 2021

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Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

17 May 2021

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RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP).

17 May 2021

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https://api.crossref.org/works/10.1016/J.MOLCEL.2020.12.041

Structural constraints on RNA virus evolution

17 May 2021

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In vivo analysis of influenza A mRNA secondary structures identifies critical regulatory motifs

17 May 2021

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Detection of RNA-Protein Interactions in Living Cells with SHAPE.

17 May 2021

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https://api.crossref.org/works/10.1016/J.MOLCEL.2020.12.041

Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis

17 May 2021

1 reference

https://api.crossref.org/works/10.1016/J.MOLCEL.2020.12.041

SHAPE reveals transcript-wide interactions, complex structural domains, and protein interactions across the Xist lncRNA in living cells.

17 May 2021

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Modeling RNA secondary structure folding ensembles using SHAPE mapping data

17 May 2021

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https://api.crossref.org/works/10.1016/J.MOLCEL.2020.12.041

Phylogenetic Analysis with Improved Parameters Reveals Conservation in lncRNA Structures.

17 May 2021

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The global and local distribution of RNA structure throughout the SARS-CoV-2 genome

17 May 2021

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https://api.crossref.org/works/10.1016/J.MOLCEL.2020.12.041

Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus

17 May 2021

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https://api.crossref.org/works/10.1016/J.MOLCEL.2020.12.041

Inhibition of HCV translation by disrupting the structure and interactions of the viral CRE and 3' X-tail

17 May 2021

1 reference

https://api.crossref.org/works/10.1016/J.MOLCEL.2020.12.041

RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome

17 May 2021

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Understanding the transcriptome through RNA structure

17 May 2021

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Receptor Recognition by the Novel Coronavirus from Wuhan: an Analysis Based on Decade-Long Structural Studies of SARS Coronavirus

17 May 2021

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Principles for targeting RNA with drug-like small molecules

17 May 2021

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https://api.crossref.org/works/10.1016/J.MOLCEL.2020.12.041

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

17 May 2021

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https://api.crossref.org/works/10.1016/J.MOLCEL.2020.12.041

An Infectious cDNA Clone of SARS-CoV-2

17 May 2021

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The structure and functions of coronavirus genomic 3' and 5' ends

17 May 2021

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Structural basis for inhibition of the RNA-dependent RNA polymerase from SARS-CoV-2 by remdesivir

17 May 2021

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https://api.crossref.org/works/10.1016/J.MOLCEL.2020.12.041

A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for hepatitis C virus RNA replication

17 May 2021

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A Novel Coronavirus from Patients with Pneumonia in China, 2019

17 May 2021

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The Short- and Long-Range RNA-RNA Interactome of SARS-CoV-2

17 May 2021

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DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo

17 May 2021

1 reference

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Genetic interactions between an essential 3' cis-acting RNA pseudoknot, replicase gene products, and the extreme 3' end of the mouse coronavirus genome

17 May 2021

1 reference

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