(Q21135273)

English

Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales

scientific article

Genome Sequence of a Mesophilic Hydrogenotrophic Methanogen Methanocella paludicola, the First Cultivated Representative of the Order Methanocellales

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scholarly article

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Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales (English)

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Takahisa Tajima

object named as

Takahisa Tajima

5

author given names

Takahisa

author last names

Tajima

1 reference

PubMed publication ID

17 August 2022

Hiroyuki Imachi

object named as

Hiroyuki Imachi

15

author given names

Hiroyuki

author last names

Imachi

1 reference

PubMed publication ID

17 August 2022

13

object named as

Koji Mori

author given names

Koji

author last names

Mori

1 reference

PubMed publication ID

17 August 2022

author name string

Sanae Sakai

1

author given names

Sanae

author last names

Sakai

1 reference

PubMed publication ID

17 August 2022

Yoshihiro Takaki

2

author given names

Yoshihiro

author last names

Takaki

1 reference

PubMed publication ID

17 August 2022

Shigeru Shimamura

3

author given names

Shigeru

author last names

Shimamura

1 reference

PubMed publication ID

17 August 2022

Mitsuo Sekine

4

author given names

Mitsuo

author last names

Sekine

1 reference

PubMed publication ID

17 August 2022

Hiroki Kosugi

6

author given names

Hiroki

author last names

Kosugi

1 reference

PubMed publication ID

17 August 2022

Natsuko Ichikawa

7

author given names

Natsuko

author last names

Ichikawa

1 reference

PubMed publication ID

17 August 2022

Eiji Tasumi

8

author given names

Eiji

author last names

Tasumi

1 reference

PubMed publication ID

17 August 2022

Aiko T Hiraki

9

author given names

Aiko T

author last names

Hiraki

1 reference

PubMed publication ID

17 August 2022

Ai Shimizu

10

author given names

Ai

author last names

Shimizu

1 reference

PubMed publication ID

17 August 2022

Yumiko Kato

11

author given names

Yumiko

author last names

Kato

1 reference

PubMed publication ID

17 August 2022

Rika Nishiko

12

author given names

Rika

author last names

Nishiko

1 reference

PubMed publication ID

17 August 2022

Nobuyuki Fujita

14

author given names

Nobuyuki

author last names

Fujita

1 reference

PubMed publication ID

17 August 2022

Ken Takai

16

author given names

Ken

author last names

Takai

1 reference

PubMed publication ID

17 August 2022

language of work or name

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publication date

2011

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6

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7

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e22898

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copyright license

Creative Commons Attribution 4.0 International

29 July 2011

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April 2022 Public Data File from Crossref

copyright status

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

19 March 2017

Cell proliferation at 122 degrees C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation

1 reference

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1 reference

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1 reference

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The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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The Universal Protein Resource (UniProt)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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Rfam: an RNA family database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens

1 reference

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Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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Genome of Rice Cluster I Archaea--the Key Methane Producers in the Rice Rhizosphere

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

19 March 2017

The crystal structure of [Fe]-hydrogenase reveals the geometry of the active site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

19 March 2017

Structure of ADP x AIF4(-)-stabilized nitrogenase complex and its implications for signal transduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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Improved prediction of signal peptides: SignalP 3.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

19 March 2017

The KEGG resource for deciphering the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

19 March 2017

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

19 March 2017

Improved microbial gene identification with GLIMMER

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

19 March 2017

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

19 March 2017

Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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Biochemistry of methanogenesis: a tribute to Marjory Stephenson. 1998 Marjory Stephenson Prize Lecture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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PAS domain S-boxes in Archaea, Bacteria and sensors for oxygen and redox

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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Methanogenic archaea: ecologically relevant differences in energy conservation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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Genomic characterization of methanomicrobiales reveals three classes of methanogens

1 reference

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Complete genome sequence of the soil actinomycete Kocuria rhizophila

1 reference

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Evolutionary primacy of sodium bioenergetics

1 reference

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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1 reference

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1 reference

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Rice Cluster I methanogens, an important group of Archaea producing greenhouse gas in soil

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Assimilatory reduction of sulfate and sulfite by methanogenic bacteria.

1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146512

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1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022898

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The coupling ion in the methanoarchaeal ATP synthases: H(+) vs. Na(+) in the A(1)A(o) ATP synthase from the archaeon Methanosarcina mazei Gö1.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022898

21 January 2018

Nitrogen-fixation genes and nitrogenase activity in Clostridium acetobutylicum and Clostridium beijerinckii

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022898

21 January 2018

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1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022898

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1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022898

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Search for Primitive Methanopyrus Based on Genetic Distance Between Val- and Ile-tRNA Synthetases

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0022898

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The presence of H+ and Na(+)-translocating ATPases in Methanobacterium thermoautotrophicum and their possible function under alkaline conditions

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829548

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

H2: heterodisulfide oxidoreductase complex from Methanobacterium thermoautotrophicum. Composition and properties

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829548

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oxygen sensitivity of methanogenic bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/21829548

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0022898

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2011PLoSO...622898S

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release_5gtwcqd3lzhd3awuhzq4vqjvl4

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PMC publication ID

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PubMed publication ID

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