(Q22065301)

English

Complete nucleotide sequence of the Cryptomeria japonica D. Don. chloroplast genome and comparative chloroplast genomics: diversified genomic structure of coniferous species

scientific article

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scholarly article

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18570682%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

Complete nucleotide sequence of the Cryptomeria japonica D. Don. chloroplast genome and comparative chloroplast genomics: diversified genomic structure of coniferous species (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18570682%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

1 reference

based on heuristic

inferred from title

Cryptomeria japonica

object named as

Cryptomeria japonica

1 reference

based on heuristic

inferred from title

Atsushi Watanabe

2

object named as

Atsushi Watanabe

author given names

Atsushi

author last names

Watanabe

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18570682%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

author name string

Tomonori Hirao

1

author given names

Tomonori

author last names

Hirao

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18570682%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

Manabu Kurita

3

author given names

Manabu

author last names

Kurita

1 reference

Europe PubMed Central

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9 January 2020

Teiji Kondo

4

author given names

Teiji

author last names

Kondo

1 reference

Europe PubMed Central

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9 January 2020

Katsuhiko Takata

5

author given names

Katsuhiko

author last names

Takata

1 reference

Europe PubMed Central

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9 January 2020

language of work or name

0 references

publication date

23 June 2008

1 reference

Europe PubMed Central

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9 January 2020

BMC Plant Biology

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18570682%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

8

1 reference

Europe PubMed Central

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9 January 2020

1

0 references

70

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18570682%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

https://scigraph.springernature.com/pub.10.1186/1471-2229-8-70

0 references

Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

Chloroplast and mitochondrial DNA are paternally inherited in Sequoia sempervirens D. Don Endl

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

The chloroplast ycf3 and ycf4 open reading frames of Chlamydomonas reinhardtii are required for the accumulation of the photosystem I complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

Chloroplast Genome (cpDNA) of Cycas taitungensis and 56 cp Protein-Coding Genes of Gnetum parvifolium: Insights into cpDNA Evolution and Phylogeny of Extant Seed Plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

The Complete Chloroplast Genome Sequence of Pelargonium x hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

Complete Nucleotide Sequence of the Chloroplast Genome from the Tasmanian Blue Gum, Eucalyptus globulus (Myrtaceae)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

Chloroplast genomes of two conifers lack a large inverted repeat and are extensively rearranged

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

19 March 2017

Automatic annotation of organellar genomes with DOGMA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

7 April 2017

Using CLUSTAL for multiple sequence alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

7 April 2017

Rearrangements in the chloroplast genomes of mung bean and pea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

Complete chloroplast genome sequence of Gycine max and comparative analyses with other legume genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

The complete nucleotide sequence of the hornwort (Anthoceros formosae) chloroplast genome: insight into the earliest land plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

Molecular phylogeny of extant gymnosperms and seed plant evolution: analysis of nuclear 18S rRNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

Creation of a novel protein-coding region at the RNA level in black pine chloroplasts: the pattern of RNA editing in the gymnosperm chloroplast is different from that in angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

Identification and expression of the chloroplast clpP gene in the conifer Pinus contorta.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

Chloroplast DNA diversity among trees, populations and species in the California closed-cone pines (Pinus radiata, Pinus muricata and Pinus attenuata)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

Chloroplast DNA polymorphisms in lodgepole and jack pines and their hybrids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

The chloroplast chromosomes in land plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

The chloroplast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

12 September 2017

Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

27 September 2017

The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

30 May 2018

Paternally inherited chloroplast polymorphism in Pinus: estimation of diversity and population subdivision, and tests of disequilibrium with a maternally inherited mitochondrial polymorphism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

30 May 2018

Organization and sequence of five tRNA genes and of an unidentified reading frame in the wheat chloroplast genome: evidence for gene rearrangements during the evolution of chloroplast genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

30 May 2018

Structure and organization of Marchantia polymorpha chloroplast genome. II. Gene organization of the large single copy region from rps'12 to atpB.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

30 May 2018

Ordered processing and splicing in a polycistronic transcript in liverwort chloroplasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

30 May 2018

Dispersed repetitive sequences in the chloroplast genome of Douglas-fir

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

30 May 2018

The chloroplast genome of the gymnosperm Pinus contorta: a physical map and a complete collection of overlapping clones.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

30 May 2018

Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

30 May 2018

Chloroplast DNA in Pinus monticola : 1. Physical map.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

29 November 2018

Physical map of chloroplast DNA in sugi, Cryptomeria japonica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

29 November 2018

The chloroplast genome from a lycophyte (microphyllophyte), Selaginella uncinata, has a unique inversion, transpositions and many gene losses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

29 November 2018

GRIMM: genome rearrangements web server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

29 November 2018

A mutation hotspot in the chloroplast genome of a conifer (Douglas-fir: Pseudotsuga) is caused by variability in the number of direct repeats derived from a partially duplicated tRNA gene.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443145

29 November 2018

Paternal chloroplast inheritance patterns in pine hybrids detected with trnL-trnF intergenic region polymorphism

1 reference

https://pubmed.ncbi.nlm.nih.gov/18570682

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plastid transformation reveals that moss tRNA(Arg)-CCG is not essential for plastid function

1 reference

https://pubmed.ncbi.nlm.nih.gov/18570682

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Geographical cline of chloroplast DNA variation in Abies mariesii

1 reference

https://pubmed.ncbi.nlm.nih.gov/18570682

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Classifying seedlots of Picea sitchensis and P. glauca in zones of introgression using restriction analysis of chloroplast DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/18570682

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Paternal inheritance of chloroplast DNA and maternal inheritance of mitochondrial DNA in loblolly pine

1 reference

https://pubmed.ncbi.nlm.nih.gov/18570682

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Paternal inheritance of chloroplast DNA in Larix

1 reference

https://pubmed.ncbi.nlm.nih.gov/18570682

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The chloroplast genomes of conifers lack one of the rRNA-encoding inverted repeats

1 reference

https://pubmed.ncbi.nlm.nih.gov/18570682

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pseudogenes and short repeated sequences in the rice chloroplast genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/18570682

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

EVOLUTIONARY SIGNIFICANCE OF THE LOSS OF THE CHLOROPLAST-DNA INVERTED REPEAT IN THE LEGUMINOSAE SUBFAMILY PAPILIONOIDEAE.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18570682

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The endpoints of an inversion in wheat chloroplast DNA are associated with short repeated sequences containing homology to att-lambda

1 reference

https://pubmed.ncbi.nlm.nih.gov/18570682

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A transcription map of the chloroplast genome from rice (Oryza sativa)

1 reference

https://pubmed.ncbi.nlm.nih.gov/18570682

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA

1 reference

4 November 2023

https://opencitations.net/index/coci/api/v1/citations/10.1038/322572A0

Identifiers

10.1186/1471-2229-8-70

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18570682%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

Dimensions Publication ID

0 references

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18570682%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18570682%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

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