(Q22242275)

7 February 2023

14

Philippe Lemey

Philippe

Lemey

1 reference

7 February 2023

5

Trevor Bedford

Trevor

Bedford

1 reference

7 February 2023

4

Guy Baele

Guy

Baele

1 reference

7 February 2023

13

Oliver G Pybus

Oliver G

Pybus

1 reference

7 February 2023

3

Marc A Suchard

Marc A

Suchard

1 reference

7 February 2023

Nuno R Faria

1

Nuno R

Faria

1 reference

7 February 2023

David Posada

11

David

Posada

1 reference

7 February 2023

7

Andrew J Tatem

Andrew J

Tatem

1 reference

7 February 2023

12

Martine Peeters

Martine

Peeters

1 reference

7 February 2023

Melissa J Ward

6

Melissa J

Ward

1 reference

7 February 2023

João D Sousa

series ordinal

8

author given names

João D

author last names

Sousa

1 reference

7 February 2023

Nimalan Arinaminpathy

series ordinal

9

author given names

Nimalan

author last names

Arinaminpathy

1 reference

7 February 2023

Jacques Pépin

series ordinal

10

author given names

Jacques

author last names

Pépin

1 reference

High GUD incidence in the early 20 century created a particularly permissive time window for the origin and initial spread of epidemic HIV strains

7 February 2023

language of work or name

English

0 references

publication date

3 October 2014

0 references

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

Science

0 references

volume

346

0 references

issue

6205

0 references

page(s)

56-61

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

The emergence of HIV/AIDS in the Americas and beyond

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Chimpanzee reservoirs of pandemic and nonpandemic HIV-1

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

The molecular population genetics of HIV-1 group O

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

The causes and consequences of HIV evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Origin of HIV Type 1 in Colonial French Equatorial Africa?

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

An African HIV-1 sequence from 1959 and implications for the origin of the epidemic

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Recombination rate and selection strength in HIV intra-patient evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Dating the common ancestor of SIVcpz and HIV-1 group M and the origin of HIV-1 subtypes using a new method to uncover clock-like molecular evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Timing the ancestor of the HIV-1 pandemic strains

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Isolation of human T-cell leukemia virus in acquired immune deficiency syndrome (AIDS)

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Pneumocystis pneumonia--Los Angeles

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Isolation of a T-Lymphotropic Retrovirus from a Patient at Risk for Acquired Immune Deficiency Syndrome (AIDS)

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Enhanced heterosexual transmission hypothesis for the origin of pandemic HIV-1

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

MAFFT version 5: improvement in accuracy of multiple sequence alignment

19 March 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1256739

Relaxed phylogenetics and dating with confidence

22 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1256739

Bayesian random local clocks, or one rate to rule them all

22 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1256739

Ancient hybridization and an Irish origin for the modern polar bear matriline

22 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1256739

Bayesian phylogeography finds its roots

22 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1256739

Bayesian phylogenetics with BEAUti and the BEAST 1.7

22 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1256739

Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci

22 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1256739

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Unifying the epidemiological and evolutionary dynamics of pathogens

7 April 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Integrating phylodynamics and epidemiology to estimate transmission diversity in viral epidemics

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Molecular evolutionary signatures reveal the role of host ecological dynamics in viral disease emergence and spread

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Estimating the rate of intersubtype recombination in early HIV-1 group M strains

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

The expansion of HIV-1 in colonial Leopoldville, 1950s: driven by STDs or STD control?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Inconsistencies in estimating the age of HIV-1 subtypes due to heterotachy

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Global trends in molecular epidemiology of HIV-1 during 2000-2007.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

HIV-1 recombinants with multiple parental strains in low-prevalence, remote regions of Cameroon: evolutionary relics?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Tetherin-driven adaptation of Vpu and Nef function and the evolution of pandemic and nonpandemic HIV-1 strains.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Spatial phylodynamics of HIV-1 epidemic emergence in east Africa.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Evolutionary analysis of the dynamics of viral infectious disease

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

HIV evolutionary dynamics within and among hosts

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Recombinant viruses and early global HIV-1 epidemic

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

The earliest cases of human immunodeficiency virus type 1 group M in Congo-Kinshasa, Rwanda and Burundi and the origin of acquired immune deficiency syndrome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Human immunodeficiency virus. Phylogeny and the origin of HIV-1.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Consequences of recombination on traditional phylogenetic analysis.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Geographical distribution of HIV-1 group O viruses in Africa

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Population migration and the spread of types 1 and 2 human immunodeficiency viruses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Acquired immunodeficiency syndrome in a heterosexual population in Zaire

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Acquired immunodeficiency syndrome in Rwanda

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

The prevalence of infection with human immunodeficiency virus over a 10-year period in rural Zaire

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Human immunodeficiency virus and migrant labor in South Africa

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Hepatitis C virus infections in the Democratic Republic of Congo exhibit a cohort effect

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Confirmation of Putative HIV-1 Group P in Cameroon

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4254776

Genetic diversity and phylogeographic clustering of SIVcpzPtt in wild chimpanzees in Cameroon.

30 May 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

HIV-1 group N among HIV-1-seropositive individuals in Cameroon.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Genetic subtyping of gag and env regions of HIV type 1 isolates in Republic of Congo

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

HIV-1 subtypes and recombinants in the Republic of Congo

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Analysis of partial pol and env sequences indicates a high prevalence of HIV type 1 recombinant strains circulating in Gabon

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Genetic diversity of HIV type 1 in Likasi, southeast of the Democratic Republic of Congo

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Distribution of HIV-1 variants in the Democratic Republic of Congo suggests increase of subtype C in Kinshasa between 1997 and 2002.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

AIDS: prehistory of HIV-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Evidence of stable HIV seroprevalences in selected populations in the Democratic Republic of the Congo

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Many-core algorithms for statistical phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Phylogeography takes a relaxed random walk in continuous space and time

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Toward a quantitative understanding of viral phylogeography

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Evolutionary history and phylogeography of human viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Counting labeled transitions in continuous-time Markov models of evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Fast, accurate and simulation-free stochastic mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Learning to count: robust estimates for labeled distances between molecular sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Improving marginal likelihood estimation for Bayesian phylogenetic model selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

A simple and robust statistical test for detecting the presence of recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Genetic diversification and recombination of HIV type 1 group M in Kinshasa, Democratic Republic of Congo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Genetic subtypes of HIV type 1 in Republic of Congo

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

Apparent founder effect during the early years of the San Francisco HIV type 1 epidemic (1978-1979).

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

21 January 2018

Recombination in HIV-1

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

[Contribution to the study of hepatitis in Africa: epidemic hepatitis and inoculation hepatitis]

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/25278604

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Estimating the pattern of nucleotide substitution

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1256739

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.1256739

1 reference

1 reference

1 reference

1 reference