(Q24654008)

English

The complete nucleotide sequence of the cassava (Manihot esculenta) chloroplast genome and the evolution of atpF in Malpighiales: RNA editing and multiple losses of a group II intron

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The complete nucleotide sequence of the cassava (Manihot esculenta) chloroplast genome and the evolution of atpF in Malpighiales: RNA editing and multiple losses of a group II intron (English)

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Manihot Esculenta

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Robert K. Jansen

6

object named as

Robert K Jansen

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Kenneth J. Wurdack

2

object named as

Kenneth J Wurdack

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author name string

Henry Daniell

1

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Anderson Kanagaraj

3

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Seung-Bum Lee

4

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Christopher Saski

5

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language of work or name

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publication date

March 2008

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Theoretical and Applied Genetics

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116

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5

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723-37

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Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

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7 April 2017

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The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales

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MRBAYES: Bayesian inference of phylogenetic trees

1 reference

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7 April 2017

MODELTEST: testing the model of DNA substitution

1 reference

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Base-calling of automated sequencer traces using phred. II. Error probabilities

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1 reference

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1 reference

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7 April 2017

Host-to-parasite gene transfer in flowering plants: phylogenetic evidence from Malpighiales

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

7 April 2017

The ins and outs of group II introns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

7 April 2017

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1 reference

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7 April 2017

Molecular phylogenetic analysis of Phyllanthaceae (Phyllanthoideae pro parte, Euphorbiaceae sensu lato) using plastid RBCL DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

7 April 2017

Automatic annotation of organellar genomes with DOGMA

1 reference

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7 April 2017

Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo

1 reference

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7 April 2017

Molecular phylogenetics of the giant genus Croton and tribe Crotoneae (Euphorbiaceae sensu stricto) using ITS and TRNL-TRNF DNA sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Molecular phylogenetic analysis of Euphorbiaceae sensu stricto based on plastid and nuclear DNA sequences and ovule and seed character evolution

1 reference

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28 September 2017

Expression of cholera toxin B-proinsulin fusion protein in lettuce and tobacco chloroplasts--oral administration protects against development of insulitis in non-obese diabetic mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Transgene containment by maternal inheritance: effective or elusive?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Production of biopharmaceuticals and vaccines in plants via the chloroplast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Complete chloroplast genome sequence of Gycine max and comparative analyses with other legume genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Molecular phylogenetics of Phyllanthaceae inferred from five genes (plastid atpB, matK, 3'ndhF, rbcL, and nuclear PHYC).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Breakthrough in chloroplast genetic engineering of agronomically important crops

1 reference

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28 September 2017

Explosive radiation of Malpighiales supports a mid-cretaceous origin of modern tropical rain forests

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Cassava biology and physiology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Plastid transformation in higher plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

The Plastid Chromosome of Atropa belladonna and its Comparison with that of Nicotiana tabacum: The Role of RNA Editing in Generating Divergence in the Process of Plant Speciation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Lariat formation and a hydrolytic pathway in plant chloroplast group II intron splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Expression of an antimicrobial peptide via the chloroplast genome to control phytopathogenic bacteria and fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Complete Structure of the Chloroplast Genome of Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Comparative analysis of splicing of the complete set of chloroplast group II introns in three higher plant mutants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Evidence on the origin of cassava: phylogeography of Manihot esculenta

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Overexpression of the Bacillus thuringiensis (Bt) Cry2Aa2 protein in chloroplasts confers resistance to plants against susceptible and Bt-resistant insects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Containment of herbicide resistance through genetic engineering of the chloroplast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Cassava as a food

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 September 2017

Sequence of the tomato chloroplast DNA and evolutionary comparison of solanaceous plastid genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

30 May 2018

Overexpression of the Bt cry2Aa2 operon in chloroplasts leads to formation of insecticidal crystals

1 reference

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30 May 2018

The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor. Two radically different evolutionary patterns within green algae

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30 May 2018

Effects of RNA editing and gene processing on phylogenetic reconstruction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

30 May 2018

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://api.crossref.org/works/10.1007%2FS00122-007-0706-Y

21 January 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 November 2018

Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns.

1 reference

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28 November 2018

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1 reference

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28 November 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 November 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 November 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 November 2018

Stable transformation of petunia plastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 November 2018

Plastid-expressed betaine aldehyde dehydrogenase gene in carrot cultured cells, roots, and leaves confers enhanced salt tolerance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 November 2018

Phylogeny and self-splicing ability of the plastid tRNA-Leu group I Intron.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 November 2018

Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 November 2018

Co-transcription pattern of an introgressed operon in the maize chloroplast genome comprising four ATP synthase subunit genes and the ribosomal rps2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 November 2018

Structure and evolution of the largest chloroplast gene (ORF2280): internal plasticity and multiple gene loss during angiosperm evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587239

28 November 2018

Technical Advance: Stable chloroplast transformation in potato: use of green fluorescent protein as a plastid marker

1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conservation of RNA editing between rice and maize plastids: are most editing events dispensable?

1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microsatellite variation in cassava (Manihot esculenta, Euphorbiaceae) and its wild relatives: further evidence for a southern Amazonian origin of domestication

1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The genes encoding subunits of ATP synthase are conserved in the reduced plastid genome of the heterotrophic alga Prototheca wickerhamii

1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The sugar beet mitochondrial nad4 gene: an intron loss and its phylogenetic implication in the Caryophyllales

1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Where next for genome sequencing?

1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolution of chloroplast RNA editing

1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacterial origin of a chloroplast intron: conserved self-splicing group I introns in cyanobacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SIX INDEPENDENT LOSSES OF THE CHLOROPLAST DNA rpl2 INTRON IN DICOTYLEDONS: MOLECULAR AND PHYLOGENETIC IMPLICATIONS.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The atpF group-II intron-containing gene from spinach chloroplasts is not spliced in transgenic Chlamydomonas chloroplasts

1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/18214421

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II

1 reference

https://api.crossref.org/works/10.1007%2FS00122-007-0706-Y

7 January 2021

based on heuristic

inferred from DOI database lookup

Parallel Loss of a Slowly Evolving Intron from Two Closely Related Families in Asparagales

1 reference

https://api.crossref.org/works/10.1007%2FS00122-007-0706-Y

7 January 2021

based on heuristic

inferred from DOI database lookup

Phylogenetic Relationships and Chromosome Number Evolution in Passiflora

1 reference

https://api.crossref.org/works/10.1007%2FS00122-007-0706-Y

7 January 2021

based on heuristic

inferred from DOI database lookup

Multiple Independent Losses of the rpoC1 Intron in Angiosperm Chloroplast DNA's

1 reference

https://api.crossref.org/works/10.1007%2FS00122-007-0706-Y

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1007/S00122-007-0706-Y

1 reference

Consolidated OpenCitations Corpus – April 2017

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

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