(Q22065669)

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The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms

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scholarly article

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25 December 2019

The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms (English)

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25 December 2019

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5

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Henry Daniell

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Henry

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Daniell

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25 December 2019

Robert K. Jansen

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Robert K

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Jansen

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Robert K Jansen

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25 December 2019

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Nalapalli Samson

1

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Nalapalli

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Samson

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25 December 2019

Michael G Bausher

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Michael G

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Bausher

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25 December 2019

Seung-Bum Lee

3

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Seung-Bum

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Lee

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25 December 2019

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1 March 2007

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25 December 2019

Plant Biotechnology Journal

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25 December 2019

5

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25 December 2019

339-353

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25 December 2019

2

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25 December 2019

The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

Molecular strategies for gene containment in transgenic crops

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

The Complete Chloroplast Genome Sequence of Pelargonium x hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

Complete Nucleotide Sequence of the Chloroplast Genome from the Tasmanian Blue Gum, Eucalyptus globulus (Myrtaceae)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

Identifying the Basal Angiosperm Node in Chloroplast Genome Phylogenies: Sampling One's Way Out of the Felsenstein Zone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

The Chloroplast Genome Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Reveals Unusual Structural Features and New Insights into the Branching Order of Chlorophyte Lineages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

The Chloroplast Genome of Nymphaea alba: Whole-Genome Analyses and the Problem of Identifying the Most Basal Angiosperm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

MODELTEST: testing the model of DNA substitution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

19 March 2017

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://api.crossref.org/works/10.1111/J.1467-7652.2007.00245.X

22 April 2017

Complete Structure of the Chloroplast Genome of Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1111/J.1467-7652.2007.00245.X

22 April 2017

The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization

1 reference

https://api.crossref.org/works/10.1111/J.1467-7652.2007.00245.X

22 April 2017

Automatic annotation of organellar genomes with DOGMA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

7 April 2017

REPuter: the manifold applications of repeat analysis on a genomic scale

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

7 April 2017

Amborella not a "basal angiosperm"? Not so fast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Transformation of poplar (Populus alba) plastids and expression of foreign proteins in tree chloroplasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Plastid transformation in the monocotyledonous cereal crop, rice (Oryza sativa) and transmission of transgenes to their progeny.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Complete chloroplast genome sequence of Gycine max and comparative analyses with other legume genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Breakthrough in chloroplast genetic engineering of agronomically important crops

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Stable transformation of the cotton plastid genome and maternal inheritance of transgenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Chloroplast genetic engineering to improve agronomic traits.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

The Plastid Chromosome of Atropa belladonna and its Comparison with that of Nicotiana tabacum: The Role of RNA Editing in Generating Divergence in the Process of Plant Speciation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Milestones in chloroplast genetic engineering: an environmentally friendly era in biotechnology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Structural features of a wheat plastome as revealed by complete sequencing of chloroplast DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Expression of an antimicrobial peptide via the chloroplast genome to control phytopathogenic bacteria and fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Stable genetic transformation of tomato plastids and expression of a foreign protein in fruit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Complete Structure of the Chloroplast Genome of a Legume, Lotus japonicus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Complete nucleotide sequence of the Oenothera elata plastid chromosome, representing plastome I of the five distinguishable euoenothera plastomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Overexpression of the Bacillus thuringiensis (Bt) Cry2Aa2 protein in chloroplasts confers resistance to plants against susceptible and Bt-resistant insects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

12 September 2017

Low probability of chloroplast movement from oilseed rape (Brassica napus) into wild Brassica rapa.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

27 September 2017

Containment of herbicide resistance through genetic engineering of the chloroplast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

27 September 2017

Generation and analysis of soybean plastid transformants expressing Bacillus thuringiensis Cry1Ab protoxin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

30 May 2018

Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

30 May 2018

Expression of the native cholera toxin B subunit gene and assembly as functional oligomers in transgenic tobacco chloroplasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

30 May 2018

Overexpression of the Bt cry2Aa2 operon in chloroplasts leads to formation of insecticidal crystals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

30 May 2018

Generation of fertile transplastomic soybean.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

21 January 2018

Efficient and stable transformation of Lactuca sativa L. cv. Cisco (lettuce) plastids.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

21 January 2018

Plastid-expressed betaine aldehyde dehydrogenase gene in carrot cultured cells, roots, and leaves confers enhanced salt tolerance

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

21 January 2018

Stable plastid transformation in lettuce (Lactuca sativa L.).

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

21 January 2018

Producing decaffeinated coffee plants

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

21 January 2018

Characterization of heterologous multigene operons in transgenic chloroplasts: transcription, processing, and translation.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

21 January 2018

Engineering cytoplasmic male sterility via the chloroplast genome by expression of {beta}-ketothiolase.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

21 January 2018

Phytoremediation of organomercurial compounds via chloroplast genetic engineering

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

21 January 2018

Transient expression of β-glucuronidase following biolistic delivery of foreign DNA into coffee tissues.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

21 January 2018

Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

21 January 2018

Analysis of Acorus calamus chloroplast genome and its phylogenetic implications.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

29 November 2018

Methods for obtaining and analyzing whole chloroplast genome sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

29 November 2018

Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome: a comparative analysis of four monocot chloroplast genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

29 November 2018

Bacillus thuringiensis serovar israelensis is highly toxic to the coffee berry borer, Hypothenemus hampei Ferr. (Coleoptera: Scolytidae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

29 November 2018

Caffeine: a well known but little mentioned compound in plant science

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3473179

29 November 2018

Technical Advance: Stable chloroplast transformation in potato: use of green fluorescent protein as a plastid marker

1 reference

https://pubmed.ncbi.nlm.nih.gov/17309688

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The place of Amborella within the radiation of angiosperms

1 reference

https://pubmed.ncbi.nlm.nih.gov/17309688

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17309688

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetically modified coffee plants expressing the Bacillus thuringiensis cry1Ac gene for resistance to leaf miner

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

7 January 2021

based on heuristic

inferred from DOI database lookup

Biotechnology is booming in Washington State

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

7 January 2021

based on heuristic

inferred from DOI database lookup

Positive selectable marker genes for routine plant transformation

1 reference

https://api.crossref.org/works/10.1111%2FJ.1467-7652.2007.00245.X

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1111/J.1467-7652.2007.00245.X

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17309688%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17309688%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17309688%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

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