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Miniprimer PCR, a new lens for viewing the microbial world
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scholarly article
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title
Miniprimer PCR, a new lens for viewing the microbial world
(English)
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main subject
food science
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author
Gary Ruvkun
series ordinal
5
object named as
Gary Ruvkun
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Jo Handelsman
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4
object named as
Jo Handelsman
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author name string
Thomas A Isenbarger
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1
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Michael Finney
series ordinal
2
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Carlos Ríos-Velázquez
series ordinal
3
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language of work or name
English
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publication date
February 2008
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published in
Applied and Environmental Microbiology
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volume
74
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issue
3
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page(s)
840-9
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cites work
Visualization of comparative genomic analyses by BLAST score ratio
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
7 April 2017
Status of the Microbial Census
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
7 April 2017
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
7 April 2017
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
7 April 2017
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
7 April 2017
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
7 April 2017
Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
7 April 2017
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
7 April 2017
ARB: a software environment for sequence data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
7 April 2017
Community structure and metabolism through reconstruction of microbial genomes from the environment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
7 April 2017
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
7 April 2017
NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
7 April 2017
Phylogenetic analysis of bacterial and archaeal species in symptomatic and asymptomatic endodontic infections
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
28 September 2017
Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
28 September 2017
New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
28 September 2017
Environmental whole-genome amplification to access microbial populations in contaminated sediments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
28 September 2017
Diversity of the Clostridium coccoides group in human fecal microbiota as determined by 16S rRNA gene library
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
28 September 2017
PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
28 September 2017
At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
28 September 2017
Phylum- and class-specific PCR primers for general microbial community analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
28 September 2017
Molecular identification of potential pathogens in water and air of a hospital therapy pool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
28 September 2017
Phylogenetic characterization of 16S rRNA gene clones from deep-groundwater microorganisms that pass through 0.2-micrometer-pore-size filters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
28 September 2017
Fine-scale phylogenetic architecture of a complex bacterial community.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
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A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
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New perspective on uncultured bacterial phylogenetic division OP11.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
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Review and re-analysis of domain-specific 16S primers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
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SAR11 clade dominates ocean surface bacterioplankton communities.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
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Recovery of novel bacterial diversity from a forested wetland impacted by reject coal
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
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Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
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Novel bacterial lineages at the (sub)division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2227730
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1 reference
stated in
PubMed Central
reference URL
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1 reference
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PubMed Central
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28 November 2018
Identifiers
DOI
10.1128/AEM.01933-07
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PMC publication ID
2227730
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PubMed publication ID
18083877
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ResearchGate publication ID
5764647
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