Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q26748796)
Watch
English
RNA systems biology: uniting functional discoveries and structural tools to understand global roles of RNAs
scientific article
In more languages
edit
Statements
instance of
scholarly article
0 references
title
RNA systems biology: uniting functional discoveries and structural tools to understand global roles of RNAs
(English)
0 references
author
Eric J Strobel
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
5098397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27132125%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
Kyle E Watters
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
5098397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27132125%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
Julius B Lucks
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
5098397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27132125%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
author name string
David Loughrey
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
5098397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27132125%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
language of work or name
English
0 references
publication date
June 2016
0 references
published in
Current Opinion in Biotechnology
1 reference
stated in
Europe PubMed Central
PMC publication ID
5098397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27132125%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
volume
39
1 reference
stated in
Europe PubMed Central
PMC publication ID
5098397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27132125%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
page(s)
182-191
1 reference
stated in
Europe PubMed Central
PMC publication ID
5098397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27132125%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
cites work
Simultaneous characterization of cellular RNA structure and function with in-cell SHAPE-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
The landscape of long noncoding RNAs in the human transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
Crystal structure and mechanistic investigation of the twister ribozyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
Structural basis of the non-coding RNA RsmZ acting as a protein sponge
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
The noncoding RNA revolution-trashing old rules to forge new ones
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
Characterization of self-cleaving RNA sequences on the genome and antigenome of human hepatitis delta virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
New classes of self-cleaving ribozymes revealed by comparative genomics analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
MicL, a new σE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
Disease-associated mutations that alter the RNA structural ensemble
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
Structure-Based Alignment and Consensus Secondary Structures for Three HIV-Related RNA Genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
An ancient riboswitch class in bacteria regulates purine biosynthesis and one-carbon metabolism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
Prospects for riboswitch discovery and analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
RNA maps reveal new RNA classes and a possible function for pervasive transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
7 April 2017
A 3' UTR-Derived Small RNA Provides the Regulatory Noncoding Arm of the Inner Membrane Stress Response
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Detection of RNA-Protein Interactions in Living Cells with SHAPE.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Biochemical analysis of hatchet self-cleaving ribozymes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Biochemical analysis of pistol self-cleaving ribozymes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
High-throughput determination of RNA structure by proximity ligation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
HOTAIR forms an intricate and modular secondary structure.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Control of bacterial exoelectrogenesis by c-AMP-GMP.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
GEMM-I riboswitches from Geobacter sense the bacterial second messenger cyclic AMP-GMP
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Structural imprints in vivo decode RNA regulatory mechanisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
The RNA structurome: transcriptome-wide structure probing with next-generation sequencing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Mn(2+)-sensing mechanisms of yybP-ykoY orphan riboswitches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
The ubiquitous yybP-ykoY riboswitch is a manganese-responsive regulatory element
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Bacterial riboswitches cooperatively bind Ni(2+) or Co(2+) ions and control expression of heavy metal transporters.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Functionally conserved architecture of hepatitis C virus RNA genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Detecting riboSNitches with RNA folding algorithms: a genome-wide benchmark
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Recognition of the small regulatory RNA RydC by the bacterial Hfq protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
In-line alignment and Mg²⁺ coordination at the cleavage site of the env22 twister ribozyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Structural model of an mRNA in complex with the bacterial chaperone Hfq.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Structural basis for the fast self-cleavage reaction catalyzed by the twister ribozyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Mod-seq: high-throughput sequencing for chemical probing of RNA structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Landscape and variation of RNA secondary structure across the human transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
A widespread self-cleaving ribozyme class is revealed by bioinformatics.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
The cellular environment stabilizes adenine riboswitch RNA structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
The centrality of RNA for engineering gene expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
DNMT1-interacting RNAs block gene-specific DNA methylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Structure and function of long noncoding RNAs in epigenetic regulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
SeqFold: genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Modeling and automation of sequencing-based characterization of RNA structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Genome-wide measurement of RNA secondary structure in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 September 2017
Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
31 May 2018
Structure of bacterial regulatory RNAs determines their performance in competition for the chaperone protein Hfq.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
31 May 2018
Genome-wide profiling of mouse RNA secondary structures reveals key features of the mammalian transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
31 May 2018
Riboswitches. Sequestration of a two-component response regulator by a riboswitch-regulated noncoding RNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
31 May 2018
Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
31 May 2018
Riboswitches. A riboswitch-containing sRNA controls gene expression by sequestration of a response regulator.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 November 2018
In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 November 2018
RNA SHAPE analysis in living cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098397
retrieved
28 November 2018
Identifiers
DOI
10.1016/J.COPBIO.2016.03.019
1 reference
stated in
Europe PubMed Central
PMC publication ID
5098397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27132125%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
PMC publication ID
5098397
1 reference
stated in
Europe PubMed Central
PMC publication ID
5098397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27132125%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
PubMed publication ID
27132125
1 reference
stated in
Europe PubMed Central
PMC publication ID
5098397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27132125%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
