(Q26827743)

PubMed

issue

3

1 reference

PubMed

page(s)

372-81

1 reference

Go hybrid: EM, crystallography, and beyond

PubMed

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How different from random are docking predictions when ranked by scoring functions?

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Proteasomes and their kin: proteases in the machine age

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Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles

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Implicit flexibility in protein docking: cross-docking and local refinement.

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Determining macromolecular assembly structures by molecular docking and fitting into an electron density map

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Consensus among flexible fitting approaches improves the interpretation of cryo-EM data

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On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models

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Normal mode-based fitting of atomic structure into electron density maps: application to sarcoplasmic reticulum Ca-ATPase

7 January 2021

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NORMA: a tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps.

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Cryo-electron microscopy modeling by the molecular dynamics flexible fitting method

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Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites

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Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

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Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis.

7 January 2021

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Excited states of ribosome translocation revealed through integrative molecular modeling

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Situs: A package for docking crystal structures into low-resolution maps from electron microscopy

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Fast flexible modeling of RNA structure using internal coordinates.

7 January 2021

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Turning limited experimental information into 3D models of RNA

7 January 2021

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Determining the architectures of macromolecular assemblies

7 January 2021

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Comprehensive Molecular Structure of the Eukaryotic Ribosome

7 January 2021

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Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

7 January 2021

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Modeling pilus structures from sparse data.

7 January 2021

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Atomic model of the type III secretion system needle

7 January 2021

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Simultaneous prediction of protein folding and docking at high resolution

7 January 2021

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ISD: a software package for Bayesian NMR structure calculation

7 January 2021

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Statistical mechanics analysis of sparse data

7 January 2021

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Weighting of experimental evidence in macromolecular structure determination

7 January 2021

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A blind deconvolution approach for improving the resolution of cryo-EM density maps

7 January 2021

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The HADDOCK web server for data-driven biomolecular docking

7 January 2021

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Identification of protein-protein interaction sites from docking energy landscapes.

7 January 2021

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Protein–protein docking benchmark version 4.0

7 January 2021

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Understanding the role of the Josephin domain in the PolyUb binding and cleavage properties of ataxin-3.

7 January 2021

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Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing

7 January 2021

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Structural systems biology: modelling protein interactions.

7 January 2021

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A new cytokine-receptor binding mode revealed by the crystal structure of the IL-1 receptor with an antagonist

7 January 2021

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Computational redesign of protein-protein interaction specificity

7 January 2021

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