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Application of metagenomics in the human gut microbiome
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scholarly article
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PubMed
review article
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Europe PubMed Central
title
Application of metagenomics in the human gut microbiome
(English)
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PubMed
main subject
microbiome
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metagenomics
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based on heuristic
litr
author name string
Wang WL
series ordinal
1
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stated in
PubMed
Xu SY
series ordinal
2
1 reference
stated in
PubMed
Ren ZG
series ordinal
3
1 reference
stated in
PubMed
Tao L
series ordinal
4
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stated in
PubMed
Jiang JW
series ordinal
5
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stated in
PubMed
Zheng SS
series ordinal
6
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stated in
PubMed
language of work or name
English
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stated in
PubMed
publication date
21 January 2015
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stated in
PubMed
published in
World Journal of Gastroenterology
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stated in
PubMed
volume
21
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PubMed
issue
3
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PubMed
page(s)
803-14
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PubMed
cites work
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Enterotypes of the human gut microbiome
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Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
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Metagenomic analysis of the human distal gut microbiome
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Liver ischemic preconditioning (IPC) improves intestinal microbiota following liver transplantation in rats through 16s rDNA-based analysis of microbial structure shift
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The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea
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Minireview: Gut microbiota: the neglected endocrine organ
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The gut microbiota--masters of host development and physiology
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A metagenomic insight into our gut's microbiome
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High-throughput system for the presentation of secreted and surface-exposed proteins from Gram-positive bacteria in functional metagenomics studies
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Functional metagenomics: a high throughput screening method to decipher microbiota-driven NF-κB modulation in the human gut
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Diet rapidly and reproducibly alters the human gut microbiome
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A metagenome-wide association study of gut microbiota in type 2 diabetes
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Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders
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Richness of human gut microbiome correlates with metabolic markers
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Gut microbiota composition correlates with diet and health in the elderly
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The impact of the gut microbiota on human health: an integrative view
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The human microbiome: at the interface of health and disease
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Bifidobacteria can protect from enteropathogenic infection through production of acetate
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Succession of microbial consortia in the developing infant gut microbiome
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Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
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Metagenomics: application of genomics to uncultured microorganisms
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Alterations of the human gut microbiome in liver cirrhosis
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Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe
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An integrated catalog of reference genes in the human gut microbiome
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28 September 2017
Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition
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28 September 2017
Combination of metagenomics and culture-based methods to study the interaction between ochratoxin a and gut microbiota
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28 September 2017
Role of gut microbiota and Toll-like receptors in nonalcoholic fatty liver disease
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28 September 2017
Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis
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28 September 2017
Aberrant gut microbiota composition at the onset of type 1 diabetes in young children
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28 September 2017
Persistent gut microbiota immaturity in malnourished Bangladeshi children
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28 September 2017
Relating the metatranscriptome and metagenome of the human gut.
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28 September 2017
Microbiota and diabetes: an evolving relationship.
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28 September 2017
Combined metagenomic and phenomic approaches identify a novel salt tolerance gene from the human gut microbiome
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28 September 2017
Revealing the bacterial butyrate synthesis pathways by analyzing (meta)genomic data
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28 September 2017
Dynamics and associations of microbial community types across the human body
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28 September 2017
IBD. Understanding gut microbiota in new-onset Crohn's disease
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28 September 2017
Overgrowth of the indigenous gut microbiome and irritable bowel syndrome
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28 September 2017
The impact of different DNA extraction kits and laboratories upon the assessment of human gut microbiota composition by 16S rRNA gene sequencing
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28 September 2017
Inflammation and colorectal cancer, when microbiota-host mutualism breaks
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28 September 2017
Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing
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28 September 2017
Geographical variation of human gut microbial composition
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28 September 2017
Metagenomic analysis of the stool microbiome in patients receiving allogeneic stem cell transplantation: loss of diversity is associated with use of systemic antibiotics and more pronounced in gastrointestinal graft-versus-host disease.
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28 September 2017
Non-invasive fecal metabonomic detection of colorectal cancer
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28 September 2017
Microbiome analysis of stool samples from African Americans with colon polyps.
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28 September 2017
Abnormal fecal microbiota community and functions in patients with hepatitis B liver cirrhosis as revealed by a metagenomic approach
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28 September 2017
Your gut microbiota are what you eat.
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28 September 2017
Low gut microbiota diversity in early infancy precedes asthma at school age.
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28 September 2017
Metabolism in 2013: The gut microbiota manages host metabolism
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28 September 2017
Human gut microbiome and risk for colorectal cancer
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28 September 2017
Impact of oral vancomycin on gut microbiota, bile acid metabolism, and insulin sensitivity.
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28 September 2017
Metagenomic Analysis of the Dynamic Changes in the Gut Microbiome of the Participants of the MARS-500 Experiment, Simulating Long Term Space Flight
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28 September 2017
The intestinal microbiota modulates the anticancer immune effects of cyclophosphamide
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28 September 2017
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28 September 2017
Rifaximin alters intestinal bacteria and prevents stress-induced gut inflammation and visceral hyperalgesia in rats.
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28 September 2017
Metagenomic species profiling using universal phylogenetic marker genes
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Human gut microbiota community structures in urban and rural populations in Russia
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Bacterial colonization factors control specificity and stability of the gut microbiota
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Human intestinal metagenomics: state of the art and future
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
The long-term stability of the human gut microbiota
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Gut metagenome in European women with normal, impaired and diabetic glucose control
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Country-specific antibiotic use practices impact the human gut resistome
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28 September 2017
Symptomatic atherosclerosis is associated with an altered gut metagenome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Ageing and gut microbes: perspectives for health maintenance and longevity
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Genomic approaches to studying the human microbiota
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Reciprocal interactions of the intestinal microbiota and immune system.
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28 September 2017
The Human Microbiome Project: a community resource for the healthy human microbiome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Acetate-producing bifidobacteria protect the host from enteropathogenic infection via carbohydrate transporters
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Alterations in composition and diversity of the intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Metatranscriptomic approach to analyze the functional human gut microbiota
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Metagenomic analyses: past and future trends
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Viruses in the faecal microbiota of monozygotic twins and their mothers
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
A metagenomic β-glucuronidase uncovers a core adaptive function of the human intestinal microbiome.
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
The intestinal microbiota in inflammatory bowel diseases: time to connect with the host
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
The challenges of sequencing by synthesis
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Metabolomics reveals metabolic biomarkers of Crohn's disease
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome.
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Development of high-throughput phenotyping of metagenomic clones from the human gut microbiome for modulation of eukaryotic cell growth
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Molecular mechanisms of antibacterial multidrug resistance
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28 September 2017
The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
The worldwide emergence of plasmid-mediated quinolone resistance
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Sampling the antibiotic resistome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Gut microorganisms, mammalian metabolism and personalized health care
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Quantifying the accessibility of the metagenome by random expression cloning techniques.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Molecular assessment of intestinal microflora
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Toward functional genomics in bacteria: analysis of gene expression in Escherichia coli from a bacterial artificial chromosome library of Bacillus cereus
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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28 September 2017
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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31 May 2018
A method for purifying high quality and high yield plasmid DNA for metagenomic and deep sequencing approaches.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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31 May 2018
Identification of NF-κB modulation capabilities within human intestinal commensal bacteria
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4299332
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31 May 2018
Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome.
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31 May 2018
The gut microbiome in health and disease
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21 January 2018
The microbiome explored: recent insights and future challenges
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21 January 2018
The core gut microbiome, energy balance and obesity
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21 January 2018
Distribution of tetracycline and erythromycin resistance genes among human oral and fecal metagenomic DNA.
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21 January 2018
Transfer of an ampicillin resistance gene between two Escherichia coli strains in the bowel microbiota of an infant treated with antibiotics.
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21 January 2018
Functional screening of antibiotic resistance genes from human gut microbiota reveals a novel gene fusion
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21 January 2018
Characterization of fecal microbial communities in patients with liver cirrhosis.
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21 January 2018
Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH.
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21 January 2018
Neurodevelopmental disorders: the gut-microbiome-brain connection.
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21 January 2018
Ecology drives a global network of gene exchange connecting the human microbiome.
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21 January 2018
Prediction of effective genome size in metagenomic samples
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21 January 2018
Shotgun metaproteomics of the human distal gut microbiota
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21 January 2018
Metabolomics of Fecal Extracts Detects Altered Metabolic Activity of Gut Microbiota in Ulcerative Colitis and Irritable Bowel Syndrome
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21 January 2018
Rapid and Noninvasive Metabonomic Characterization of Inflammatory Bowel Disease
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Gut microbiome, obesity-related comorbidities, and low-grade chronic inflammation
1 reference
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https://pubmed.ncbi.nlm.nih.gov/25624713
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.3748/WJG.V21.I3.803
0 references
PMC publication ID
4299332
1 reference
stated in
PubMed
PubMed publication ID
25624713
1 reference
stated in
PubMed
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