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Metabolic modulation of chromatin: implications for DNA repair and genomic integrity
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title
Metabolic modulation of chromatin: implications for DNA repair and genomic integrity
(English)
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stated in
PubMed
author name string
Jinping Liu
series ordinal
1
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language of work or name
English
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stated in
PubMed
publication date
17 September 2013
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stated in
PubMed
published in
Frontiers in Genetics
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volume
4
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PubMed
page(s)
182
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PubMed
cites work
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Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases
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53BP1 loss rescues BRCA1 deficiency and is associated with triple-negative and BRCA-mutated breast cancers
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CBP/p300-mediated acetylation of histone H3 on lysine 56
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SIRT1 regulates the histone methyl-transferase SUV39H1 during heterochromatin formation
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Nutrient-sensitive mitochondrial NAD+ levels dictate cell survival
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DNA damage, homology-directed repair, and DNA methylation
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Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair
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Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases
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Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
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Human SirT1 interacts with histone H1 and promotes formation of facultative heterochromatin
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Crystal structure of the nucleosome core particle at 2.8 A resolution
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Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination
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Chromatin modifications and their function
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On the Origin of Cancer Cells
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21 March 2017
Acetylation-mediated proteasomal degradation of core histones during DNA repair and spermatogenesis
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Nicotinamide and PNC1 govern lifespan extension by calorie restriction in Saccharomyces cerevisiae
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21 March 2017
DNA damage activates ATM through intermolecular autophosphorylation and dimer dissociation
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Inhibition of silencing and accelerated aging by nicotinamide, a putative negative regulator of yeast sir2 and human SIRT1
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MMSET regulates histone H4K20 methylation and 53BP1 accumulation at DNA damage sites
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Histone acetylation by Trrap-Tip60 modulates loading of repair proteins and repair of DNA double-strand breaks
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Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks
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IDH mutation impairs histone demethylation and results in a block to cell differentiation
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53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark
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53BP1 inhibits homologous recombination in Brca1-deficient cells by blocking resection of DNA breaks
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p53 and metabolism
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7 April 2017
Calorie restriction extends Saccharomyces cerevisiae lifespan by increasing respiration
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7 April 2017
SIRT6 recruits SNF2H to DNA break sites, preventing genomic instability through chromatin remodeling
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Roles of poly(ADP-ribose) glycohydrolase in DNA damage and apoptosis
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Kdm4b histone demethylase is a DNA damage response protein and confers a survival advantage following γ-irradiation
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28 September 2017
KAT5 tyrosine phosphorylation couples chromatin sensing to ATM signalling
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Histone acetyltransferase 1 promotes homologous recombination in DNA repair by facilitating histone turnover
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28 September 2017
The endogenous tryptophan metabolite and NAD+ precursor quinolinic acid confers resistance of gliomas to oxidative stress
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28 September 2017
The chromatin response to DNA breaks: leaving a mark on genome integrity
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28 September 2017
Histone H4 deacetylation facilitates 53BP1 DNA damage signaling and double-strand break repair
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28 September 2017
DMAP1 is an essential regulator of ATM activity and function
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Poly(ADP-ribosyl)ation links the chromatin remodeler SMARCA5/SNF2H to RNF168-dependent DNA damage signaling
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28 September 2017
Histone lysine methylation dynamics: establishment, regulation, and biological impact
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28 September 2017
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28 September 2017
Regulation of chromatin structure by poly(ADP-ribosyl)ation
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28 September 2017
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28 September 2017
Prime, repair, restore: the active role of chromatin in the DNA damage response
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28 September 2017
Histone ADP-ribosylation facilitates gene transcription by directly remodeling nucleosomes
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28 September 2017
Bat3 facilitates H3K79 dimethylation by DOT1L and promotes DNA damage-induced 53BP1 foci at G1/G2 cell-cycle phases
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28 September 2017
Chromatin dynamics in DNA double-strand break repair
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28 September 2017
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28 September 2017
More than just a focus: The chromatin response to DNA damage and its role in genome integrity maintenance
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28 September 2017
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28 September 2017
SPR-5 is a histone H3K4 demethylase with a role in meiotic double-strand break repair
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28 September 2017
SIRT6 promotes DNA repair under stress by activating PARP1
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28 September 2017
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28 September 2017
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28 September 2017
PARP-2 regulates SIRT1 expression and whole-body energy expenditure
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28 September 2017
SIRT1 contributes to telomere maintenance and augments global homologous recombination
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28 September 2017
Assembly and function of DNA double-strand break repair foci in mammalian cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
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28 September 2017
The aging stress response
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stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
Rapid and transient recruitment of DNMT1 to DNA double-strand breaks is mediated by its interaction with multiple components of the DNA damage response machinery.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
Reduced histone biosynthesis and chromatin changes arising from a damage signal at telomeres
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
DNA methyltransferase 1-associated protein (DMAP1) is a co-repressor that stimulates DNA methylation globally and locally at sites of double strand break repair
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
PARP-1 regulates chromatin structure and transcription through a KDM5B-dependent pathway
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
Phosphorylation of MLL by ATR is required for execution of mammalian S-phase checkpoint
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
PARP1 ADP-ribosylates lysine residues of the core histone tails
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
A chromodomain switch mediated by histone H3 Lys 4 acetylation regulates heterochromatin assembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
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28 September 2017
Cell cycle-dependent deacetylation of telomeric histone H3 lysine K56 by human SIRT6.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
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28 September 2017
Screen for DNA-damage-responsive histone modifications identifies H3K9Ac and H3K56Ac in human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
Crosstalk between histone modifications during the DNA damage response.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
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28 September 2017
Histone H3 K56 acetylation, chromatin assembly, and the DNA damage checkpoint
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
DNA damage-induced acetylation of lysine 3016 of ATM activates ATM kinase activity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
S-adenosylmethionine and its products
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
Complete inactivation of DNMT1 leads to mitotic catastrophe in human cancer cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
ATP citrate lyase is an important component of cell growth and transformation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
Localized histone acetylation and deacetylation triggered by the homologous recombination pathway of double-strand DNA repair.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
Involvement of poly(ADP-ribose) polymerase-1 and XRCC1/DNA ligase III in an alternative route for DNA double-strand breaks rejoining.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
Functional interaction between PARP-1 and PARP-2 in chromosome stability and embryonic development in mouse
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 September 2017
SIRT6 exhibits nucleosome-dependent deacetylase activity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
31 May 2018
Histone H2A.Z controls a critical chromatin remodeling step required for DNA double-strand break repair
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
31 May 2018
Histone acetylation by CBP and p300 at double-strand break sites facilitates SWI/SNF chromatin remodeling and the recruitment of non-homologous end joining factors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
31 May 2018
Histone H3 methylation links DNA damage detection to activation of the tumour suppressor Tip60.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
31 May 2018
Reduced levels of poly(ADP-ribosyl)ation result in chromatin compaction and hypermethylation as shown by cell-by-cell computer-assisted quantitative analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
31 May 2018
The sirtuin SIRT6 deacetylates H3 K56Ac in vivo to promote genomic stability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 November 2018
Poly(ADP-ribose) polymerase-1 plays a role in suppressing mammary tumourigenesis in mice.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 November 2018
Histone demethylation catalysed by LSD1 is a flavin-dependent oxidative process
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 November 2018
Modulation of DNMT1 activity by ADP-ribose polymers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 November 2018
Chromatin loosening by poly(ADP)-ribose polymerase (PARP) at Drosophila puff loci
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779809
retrieved
28 November 2018
Identifiers
DOI
10.3389/FGENE.2013.00182
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2289677
OpenCitations bibliographic resource ID
2289677
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2289677
PMC publication ID
3779809
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2289677
PubMed publication ID
24065984
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2289677
ResearchGate publication ID
257072301
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