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Alternative cleavage and polyadenylation: the long and short of it
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PubMed
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Europe PubMed Central
PMC publication ID
3800139
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23632313%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
title
Alternative cleavage and polyadenylation: the long and short of it
(English)
2 references
stated in
PubMed
stated in
Europe PubMed Central
PMC publication ID
3800139
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23632313%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
author
B Tian
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3800139
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23632313%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
James L. Manley
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3800139
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23632313%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
author name string
Bin Tian
series ordinal
1
1 reference
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Crossref
James L. Manley
series ordinal
2
1 reference
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Crossref
language of work or name
English
1 reference
stated in
PubMed
publication date
27 April 2013
1 reference
stated in
Europe PubMed Central
PMC publication ID
3800139
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23632313%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
number of pages
9
1 reference
based on heuristic
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published in
Trends in Biochemical Sciences
2 references
stated in
PubMed
stated in
Europe PubMed Central
PMC publication ID
3800139
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23632313%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
volume
38
2 references
stated in
PubMed
stated in
Europe PubMed Central
PMC publication ID
3800139
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23632313%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
issue
6
2 references
stated in
PubMed
stated in
Europe PubMed Central
PMC publication ID
3800139
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23632313%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
page(s)
312-320
1 reference
stated in
Europe PubMed Central
PMC publication ID
3800139
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23632313%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
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Global changes in processing of mRNA 3' untranslated regions characterize clinically distinct cancer subtypes
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Transcription elongation factor ELL2 directs immunoglobulin secretion in plasma cells by stimulating altered RNA processing.
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Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development.
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Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection
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retrieved
28 September 2017
Protein factors in pre-mRNA 3'-end processing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
Staufen1 regulates diverse classes of mammalian transcripts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
Three functional variants of IFN regulatory factor 5 (IRF5) define risk and protective haplotypes for human lupus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
Promoter usage and alternative splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
In Vivo Evidence that Defects in the Transcriptional Elongation Factors RPB2, TFIIS, and SPT5 Enhance Upstream Poly(A) Site Utilization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
Strange bedfellows: polyadenylation factors at the promoter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
Non-stop decay--a new mRNA surveillance pathway
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
Specific transcriptional pausing activates polyadenylation in a coupled in vitro system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
The upstream sequence element of the C2 complement poly(A) signal activates mRNA 3' end formation by two distinct mechanisms.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
Alternative poly(A) site selection in complex transcription units: means to an end?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
The regulated production of mu m and mu s mRNA is dependent on the relative efficiencies of mu s poly(A) site usage and the c mu 4-to-M1 splice
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
Point mutations in AAUAAA and the poly (A) addition site: effects on the accuracy and efficiency of cleavage and polyadenylation in vitro
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 September 2017
Dynamic transitions in RNA polymerase II density profiles during transcription termination
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
31 May 2018
Biased chromatin signatures around polyadenylation sites and exons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
31 May 2018
Molecular architecture of the human pre-mRNA 3' processing complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
31 May 2018
U1 snRNP inhibits pre-mRNA polyadenylation through a direct interaction between U1 70K and poly(A) polymerase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
31 May 2018
Alternative Cleavage and Polyadenylation during Colorectal Cancer Development
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 November 2018
Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 November 2018
Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 November 2018
Mediator complex regulates alternative mRNA processing via the MED23 subunit.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 November 2018
Hu proteins regulate polyadenylation by blocking sites containing U-rich sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 November 2018
Prediction of mRNA polyadenylation sites by support vector machine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 November 2018
Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3' end processing and splicing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 November 2018
Biased alternative polyadenylation in human tissues
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 November 2018
Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 November 2018
FY is an RNA 3' end-processing factor that interacts with FCA to control the Arabidopsis floral transition.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3800139
retrieved
28 November 2018
In vitro polyadenylation is stimulated by the presence of an upstream intron
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23632313
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Interaction between the U1 snRNP-A protein and the 160-kD subunit of cleavage-polyadenylation specificity factor increases polyadenylation efficiency in vitro
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23632313
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The VP16 activation domain establishes an active mediator lacking CDK8 in vivo
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23632313
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.TIBS.2013.03.005
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
783218
stated in
Europe PubMed Central
PMC publication ID
3800139
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23632313%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
OpenCitations bibliographic resource ID
783218
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
783218
PMC publication ID
3800139
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
783218
stated in
Europe PubMed Central
PMC publication ID
3800139
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23632313%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
PubMed publication ID
23632313
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
783218
stated in
Europe PubMed Central
PMC publication ID
3800139
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23632313%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
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