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Comparing protein folding in vitro and in vivo: foldability meets the fitness challenge
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scholarly article
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title
Comparing protein folding in vitro and in vivo: foldability meets the fitness challenge
(English)
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stated in
PubMed
main subject
protein folding
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author name string
Karan S Hingorani
series ordinal
1
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Crossref
Lila M Gierasch
series ordinal
2
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stated in
Crossref
language of work or name
English
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stated in
PubMed
publication date
February 2014
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stated in
PubMed
published in
Current Opinion in Structural Biology
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PubMed
volume
24
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PubMed
page(s)
81-90
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PubMed
cites work
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21 March 2017
Conservation of Protein Structure over Four Billion Years
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Visualizing GroEL/ES in the Act of Encapsulating a Folding Protein
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21 March 2017
Mutational Tipping Points for Switching Protein Folds and Functions
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21 March 2017
Principles that govern the folding of protein chains
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Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells
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Quinary protein structure and the consequences of crowding in living cells: leaving the test-tube behind.
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28 September 2017
Computer Simulations of the Bacterial Cytoplasm
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28 September 2017
Latent effects of Hsp90 mutants revealed at reduced expression levels
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28 September 2017
Folding the proteome
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28 September 2017
Molecular chaperone functions in protein folding and proteostasis
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28 September 2017
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28 September 2017
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28 September 2017
Atomic-level description of ubiquitin folding
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28 September 2017
Chaperone activation by unfolding
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28 September 2017
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28 September 2017
All repeats are not equal: a module-based approach to guide repeat protein design
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28 September 2017
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28 September 2017
Influence of crowded cellular environments on protein folding, binding, and oligomerization: biological consequences and potentials of atomistic modeling
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28 September 2017
Experiments and simulations show how long-range contacts can form in expanded unfolded proteins with negligible secondary structure
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28 September 2017
The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis
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28 September 2017
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In vivo translation rates can substantially delay the cotranslational folding of the Escherichia coli cytosolic proteome
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28 September 2017
Protein quality control acts on folding intermediates to shape the effects of mutations on organismal fitness
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28 September 2017
Folding of large multidomain proteins by partial encapsulation in the chaperonin TRiC/CCT.
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28 September 2017
Cellular crowding imposes global constraints on the chemistry and evolution of proteomes
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28 September 2017
Watching protein structure at work in living cells using NMR spectroscopy.
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28 September 2017
Cumulative impact of chaperone-mediated folding on genome evolution
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28 September 2017
A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function
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28 September 2017
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28 September 2017
Protein biophysics explains why highly abundant proteins evolve slowly
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28 September 2017
Information encoded in non-native states drives substrate-chaperone pairing
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28 September 2017
Monitoring cotranslational protein folding in mammalian cells at codon resolution
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28 September 2017
Temperature dependence of protein folding kinetics in living cells
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28 September 2017
Global analysis of chaperone effects using a reconstituted cell-free translation system.
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28 September 2017
FoldEco: a model for proteostasis in E. coli
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28 September 2017
Chaperone-dependent mechanisms for acid resistance in enteric bacteria
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28 September 2017
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
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28 September 2017
Protein misinteraction avoidance causes highly expressed proteins to evolve slowly
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28 September 2017
Single-molecule fluorescence experiments determine protein folding transition path times
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28 September 2017
β-Bulge triggers route-switching on the functional landscape of interleukin-1β.
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28 September 2017
Small-angle X-ray scattering and single-molecule FRET spectroscopy produce highly divergent views of the low-denaturant unfolded state
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28 September 2017
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28 September 2017
Biophysical and structural considerations for protein sequence evolution
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28 September 2017
The two faces of Janus: functional interactions and protein aggregation
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28 September 2017
How, when and why proteins collapse: the relation to folding
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28 September 2017
How fast-folding proteins fold
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28 September 2017
The complex folding network of single calmodulin molecules
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28 September 2017
Single-molecule fluorescence spectroscopy maps the folding landscape of a large protein
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28 September 2017
Deletion of internal structured repeats increases the stability of a leucine-rich repeat protein, YopM.
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28 September 2017
ClpXP, an ATP-powered unfolding and protein-degradation machine
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28 September 2017
An upper limit for macromolecular crowding effects
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28 September 2017
Substrate binding drives large-scale conformational changes in the Hsp90 molecular chaperone
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28 September 2017
On the role of frustration in the energy landscapes of allosteric proteins
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28 September 2017
Protein folding in the cell: challenges and progress
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28 September 2017
Post-reductionist protein science, or putting Humpty Dumpty back together again
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28 September 2017
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28 September 2017
Protein folding: the stepwise assembly of foldon units
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28 September 2017
Molecular evolution, intracellular organization, and the quinary structure of proteins
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28 September 2017
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28 September 2017
Emergence of glass-like behavior in Markov state models of protein folding dynamics
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31 May 2018
The ribosome modulates nascent protein folding
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31 May 2018
Chaperonin complex with a newly folded protein encapsulated in the folding chamber
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31 May 2018
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28 November 2018
GroEL/ES buffering and compensatory mutations promote protein evolution by stabilizing folding intermediates
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28 November 2018
Structural and energetic determinants of co-translational folding
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28 November 2018
Functional intermediate in the refolding pathway of a large and multidomain protein malate synthase G.
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28 November 2018
Electrostatic effect of the ribosomal surface on nascent polypeptide dynamics
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28 November 2018
The denatured state ensemble contains significant local and long-range structure under native conditions: analysis of the N-terminal domain of ribosomal protein L9.
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PubMed Central
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28 November 2018
Evolution-based design of proteins.
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28 November 2018
Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding
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28 November 2018
DnaK functions as a central hub in the E. coli chaperone network.
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28 November 2018
Trigger factor slows co-translational folding through kinetic trapping while sterically protecting the nascent chain from aberrant cytosolic interactions.
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28 November 2018
Physical map and dynamics of the chaperone network in Escherichia coli
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Proteome-wide Analysis of Chaperonin-Dependent Protein Folding in Escherichia coli
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Concerted action of the ribosome and the associated chaperone trigger factor confines nascent polypeptide folding
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12 December 2020
based on heuristic
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Model of a quinary structure between Krebs TCA cycle enzymes: a model for the metabolon
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https://pubmed.ncbi.nlm.nih.gov/24434632
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based on heuristic
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Macromolecular crowding and protein stability
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Identifiers
DOI
10.1016/J.SBI.2013.11.007
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3160768
Fatcat ID
release_4jmfhmy6ybehjcfwpxot75nw34
0 references
OpenCitations bibliographic resource ID
3160768
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3160768
PMC publication ID
3984617
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3160768
PubMed publication ID
24434632
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3160768
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