(Q26996747)

title

Computational Prediction of miRNA Genes from Small RNA Sequencing Data (English)

0 references

author

Marc Friedlander

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674563%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

author name string

Wenjing Kang

series ordinal

1

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674563%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

language of work or name

1 reference

2015

1 reference

Frontiers in Bioengineering and Biotechnology

published in

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674563%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

volume

3

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674563%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

page(s)

7

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674563%20AND%20SRC:MED&resulttype=core&format=json

RNA-guided human genome engineering via Cas9

2 June 2020

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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microRNAs exhibit high frequency genomic alterations in human cancer

21 March 2017

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21 March 2017

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miR-15 and miR-16 induce apoptosis by targeting BCL2

21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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A uniform system for microRNA annotation

21 March 2017

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Basic local alignment search tool

21 March 2017

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21 March 2017

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Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

22 April 2017

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A microRNA polycistron as a potential human oncogene

21 March 2017

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21 March 2017

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An extensive class of small RNAs in Caenorhabditis elegans

21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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DGCR8 HITS-CLIP reveals novel functions for the Microprocessor

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Identification of novel and known miRNAs in deep-sequencing data with miRDeep2.

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

High-resolution profiling and discovery of planarian small RNAs.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

DICER1 mutations in familial pleuropulmonary blastoma

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

microRNAs and cancer: an overview

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

The growing catalog of small RNAs and their association with distinct Argonaute/Piwi family members

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Computational analysis of small RNA cloning data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

RNA sequence analysis defines Dicer's role in mouse embryonic stem cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Mammalian microRNA prediction through a support vector machine model of sequence and structure

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Prediction and validation of microRNAs and their targets

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Sequence requirements for micro RNA processing and function in human cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Accuracy of microRNA discovery pipelines in non-model organisms using closely related species genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Comparison of Analysis Tools for miRNA High Throughput Sequencing Using Nerve Crush as a Model

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

PCR-based expression analysis and identification of microRNAs.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306309

Identification of plant microRNA homologs.

31 May 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2015.00007

Limitations and possibilities of small RNA digital gene expression profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2015.00007

MirPlex: a tool for identifying miRNAs in high-throughput sRNA datasets without a genome

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2015.00007

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2015.00007

One Argonaute family member, Eif2c2 (Ago2), is essential for development and appears not to be involved in DNA methylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2015.00007

A toolkit for analysing large-scale plant small RNA datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2015.00007

A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2015.00007

MicroRNA identification based on sequence and structure alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2015.00007

Mammalian microRNAs derived from genomic repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2015.00007

Evidence that miRNAs are different from other RNAs

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/25674563

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FBIOE.2015.00007

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674563%20AND%20SRC:MED&resulttype=core&format=json

release_x5hamerllfh4vck4awpko4d3ri

2 June 2020

Fatcat ID

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674563%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

PubMed publication ID

25674563

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674563%20AND%20SRC:MED&resulttype=core&format=json