(Q34312606)

1 August 2017

title

miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments (English)

1 reference

1 August 2017

1 reference

3

Suhua Shi

1 reference

1 August 2017

Ming Wen

1

1 reference

1 August 2017

Yang Shen

series ordinal

2

1 reference

1 August 2017

Tian Tang

series ordinal

4

1 reference

1 August 2017

publication date

21 June 2012

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1 August 2017

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1 August 2017

volume

13

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1 August 2017

page(s)

140

1 reference

A high-resolution map of human evolutionary constraint using 29 mammals

1 August 2017

cites work

1 reference

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Testing hypotheses on the rate of molecular evolution in relation to gene expression using microRNAs

6 July 2018

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miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

6 July 2018

1 reference

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miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Characterization of statistical features for plant microRNA prediction.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Aligning short sequencing reads with Bowtie

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Desperately seeking microRNA targets

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Adverse interactions between micro-RNAs and target genes from different species

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

High-resolution profiling and discovery of planarian small RNAs.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Parallel DNA pyrosequencing unveils new zebrafish microRNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Origin, biogenesis, and activity of plant microRNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

miROrtho: computational survey of microRNA genes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Discovering microRNAs from deep sequencing data using miRDeep

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Adaptive evolution of newly emerged micro-RNA genes in Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

miRNAminer: a tool for homologous microRNA gene search

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Conservation and evolution of miRNA regulatory programs in plant development

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Statistical analysis and significance testing of serial analysis of gene expression data using a Poisson mixture model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Rapid evolution of an X-linked microRNA cluster in primates

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Plant and animal microRNAs: similarities and differences.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Phylogenetic shadowing and computational identification of human microRNA genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Computational prediction of miRNAs in Arabidopsis thaliana

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Aligning multiple genomic sequences with the threaded blockset aligner

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

MicroRNAs: genomics, biogenesis, mechanism, and function

6 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

6 July 2018

https://api.crossref.org/works/10.1186%2F1471-2105-13-140

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Comparative analyses of multi-species sequences from targeted genomic regions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Human-mouse alignments with BLASTZ

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Tandem repeats finder: a program to analyze DNA sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3410788

Criteria for annotation of plant MicroRNAs

6 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-140

A toolkit for analysing large-scale plant small RNA datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-140

Identification of plant microRNA homologs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-140

The birth and death of microRNA genes in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-140

Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-140

21 January 2018

Identifiers

DOI

10.1186/1471-2105-13-140

1 reference

1 August 2017

DBLP publication ID

journals/bmcbi/WenSST12

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

1 August 2017

1 reference