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A decade of riboswitches
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scholarly article
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PubMed
review article
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Europe PubMed Central
title
A decade of riboswitches
(English)
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author
Evgeny Nudler
series ordinal
2
object named as
Evgeny Nudler
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Alexander Serganov
object named as
Alexander Serganov
series ordinal
1
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language of work or name
English
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stated in
PubMed
publication date
17 January 2013
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stated in
PubMed
published in
Cell
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stated in
PubMed
volume
152
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stated in
PubMed
page(s)
17-24
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stated in
PubMed
issue
1-2
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stated in
PubMed
cites work
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Inducible gene expression from the plastid genome by a synthetic riboswitch
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Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism
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Mechanism of mRNA destabilization by the glmS ribozyme
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Chemical basis of glycine riboswitch cooperativity
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Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs
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Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor
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Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria
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The riboswitch-mediated control of sulfur metabolism in bacteria
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Do mRNAs act as direct sensors of small molecules to control their expression?
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A conserved RNA structure (thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria
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Adenosylcobalamin inhibits ribosome binding to btuB RNA
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Structural insights into ligand binding and gene expression control by an adenosylcobalamin riboswitch
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B12 cofactors directly stabilize an mRNA regulatory switch
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Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch
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21 March 2017
Structural principles of nucleoside selectivity in a 2′-deoxyguanosine riboswitch
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Structural Basis of Cooperative Ligand Binding by the Glycine Riboswitch
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Structural Insights into Ligand Recognition by a Sensing Domain of the Cooperative Glycine Riboswitch
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Free State Conformational Sampling of the SAM-I Riboswitch Aptamer Domain
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Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch
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Structural insights into amino acid binding and gene control by a lysine riboswitch
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Structure of the SAM-II riboswitch bound to S-adenosylmethionine
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Structure and mechanism of a metal-sensing regulatory RNA
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Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
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In vitro selection of RNA molecules that bind specific ligands
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21 March 2017
An mRNA structure that controls gene expression by binding S-adenosylmethionine
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21 March 2017
Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria
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21 March 2017
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
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Genetic control by a metabolite binding mRNA
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21 March 2017
A conserved RNA structure element involved in the regulation of bacterial riboflavin synthesis genes
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21 March 2017
Multiple posttranscriptional regulatory mechanisms partner to control ethanolamine utilization in Enterococcus faecalis
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21 March 2017
Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
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21 March 2017
Crystal structures of the thi-box riboswitch bound to thiamine pyrophosphate analogs reveal adaptive RNA-small molecule recognition
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21 March 2017
Structure of the S-adenosylmethionine riboswitch regulatory mRNA element
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21 March 2017
Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch
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21 March 2017
The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase
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21 March 2017
Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs
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21 March 2017
Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine
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21 March 2017
A glycine-dependent riboswitch that uses cooperative binding to control gene expression
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21 March 2017
Control of gene expression by a natural metabolite-responsive ribozyme
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21 March 2017
Attenuation in the control of expression of bacterial operons
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21 March 2017
Novel riboswitch ligand analogs as selective inhibitors of guanine-related metabolic pathways
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21 March 2017
An energetically beneficial leader-linker interaction abolishes ligand-binding cooperativity in glycine riboswitches
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21 March 2017
Prospects for riboswitch discovery and analysis
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21 March 2017
Riboswitches in eubacteria sense the second messenger cyclic di-GMP
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7 April 2017
Convergent evolution of adenosine aptamers spanning bacterial, human, and random sequences revealed by structure-based bioinformatics and genomic SELEX.
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28 September 2017
Control of a Salmonella virulence locus by an ATP-sensing leader messenger RNA
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28 September 2017
Riboswitch control of Rho-dependent transcription termination
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28 September 2017
Widespread genetic switches and toxicity resistance proteins for fluoride
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28 September 2017
Mechanism for gene control by a natural allosteric group I ribozyme
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28 September 2017
Comparative study between transcriptionally- and translationally-acting adenine riboswitches reveals key differences in riboswitch regulatory mechanisms
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28 September 2017
An allosteric self-splicing ribozyme triggered by a bacterial second messenger
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28 September 2017
A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes
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28 September 2017
A stress-responsive RNA switch regulates VEGFA expression.
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28 September 2017
The UA_handle: a versatile submotif in stable RNA architectures
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28 September 2017
Thiamine biosynthesis in algae is regulated by riboswitches
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28 September 2017
Natural variability in S-adenosylmethionine (SAM)-dependent riboswitches: S-box elements in bacillus subtilis exhibit differential sensitivity to SAM In vivo and in vitro
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28 September 2017
Control of alternative RNA splicing and gene expression by eukaryotic riboswitches
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28 September 2017
Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand
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28 September 2017
A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo
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28 September 2017
Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA.
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28 September 2017
Sensing Small Molecules by Nascent RNA
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28 September 2017
Coupled changes in translation and transcription during cobalamin-dependent regulation of btuB expression in Escherichia coli.
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28 September 2017
Direct physical evidence for secondary structure in an isolated fragment of R17 bacteriophage mRNA
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31 May 2018
Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA
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31 May 2018
The ydaO motif is an ATP-sensing riboswitch in Bacillus subtilis
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28 November 2018
Automated RNA structure prediction uncovers a kink-turn linker in double glycine riboswitches
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28 November 2018
Conformational capture of the SAM-II riboswitch
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28 November 2018
The glmS riboswitch integrates signals from activating and inhibitory metabolites in vivo
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28 November 2018
Reprogramming bacteria to seek and destroy an herbicide
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28 November 2018
Tandem riboswitch architectures exhibit complex gene control functions.
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28 November 2018
An RNA sensor for intracellular Mg(2+).
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215550
retrieved
28 November 2018
The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215550
retrieved
28 November 2018
An adenosyl-cobalamin (coenzyme-B12)-repressed translational enhancer in the cob mRNA of Salmonella typhimurium.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215550
retrieved
28 November 2018
Orthogonal riboswitches for tuneable coexpression in bacteria
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23332744
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
tRNA as a positive regulator of transcription antitermination in B. subtilis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23332744
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Origin of life: The RNA world
1 reference
stated in
COCI
retrieved
4 November 2023
reference URL
https://opencitations.net/index/coci/api/v1/citations/10.1038/319618A0
Identifiers
DOI
10.1016/J.CELL.2012.12.024
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2411892
Fatcat ID
release_ks744wlrongk7edmu5oi5omax4
0 references
OpenCitations bibliographic resource ID
2411892
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2411892
PMCID
4215550
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2411892
PubMed ID
23332744
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2411892
ResearchGate publication ID
234698510
0 references
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