(Q27304053)

26 June 2017

Methods that remove batch effects while retaining group differences may lead to exaggerated confidence in downstream analyses (English)

1 reference

26 June 2017

1 reference

Einar Andreas Rødland

series ordinal

2

object named as

Einar Andreas Rødland

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Eivind Hovig

object named as

Eivind Hovig

series ordinal

3

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author name string

Vegard Nygaard

series ordinal

1

1 reference

PubMed ID

26272994

26 June 2017

language of work or name

English

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publication date

13 August 2015

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26 June 2017

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26 June 2017

17

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26 June 2017

1

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26 June 2017

29-39

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Creative Commons Attribution 4.0 International

26 June 2017

start time

13 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

object named as

limma

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679072

Normalization of cDNA microarray data

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679072

A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679072

Ten simple rules for reproducible computational research

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679072

Adjusting batch effects in microarray expression data using empirical Bayes methods

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679072

Tackling the widespread and critical impact of batch effects in high-throughput data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679072

Stratified randomization controls better for batch effects in 450K methylation analysis: a cautionary tale

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679072

Batch correction of microarray data substantially improves the identification of genes differentially expressed in rheumatoid arthritis and osteoarthritis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679072

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679072

Relative impact of key sources of systematic noise in Affymetrix and Illumina gene-expression microarray experiments

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679072

Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679072

Comparing the biological impact of glatiramer acetate with the biological impact of a generic

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4679072

Gene expression analysis reveals functional pathways of glatiramer acetate activation.

31 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOSTATISTICS%2FKXV027

10.1093/BIOSTATISTICS/KXV027

21 January 2018

Identifiers

DOI

1 reference

26 June 2017

0 references

1 reference

PubMed ID

26272994